Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0043
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35613| Best HMM Match : MIT (HMM E-Value=5.1e-09)                  115   5e-26
SB_28977| Best HMM Match : AAA (HMM E-Value=0)                         65   5e-11
SB_755| Best HMM Match : MIT (HMM E-Value=0.055)                       40   0.003
SB_11360| Best HMM Match : PDZ (HMM E-Value=0)                         30   1.7  
SB_732| Best HMM Match : AAA (HMM E-Value=0)                           29   3.0  
SB_39546| Best HMM Match : FCH (HMM E-Value=8e-13)                     29   4.0  
SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   4.0  
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_24598| Best HMM Match : Protamine_3 (HMM E-Value=1.4)               28   7.0  
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         28   9.3  
SB_16762| Best HMM Match : 7tm_2 (HMM E-Value=0.17)                    28   9.3  
SB_15952| Best HMM Match : TPR_1 (HMM E-Value=5.8e-11)                 28   9.3  

>SB_35613| Best HMM Match : MIT (HMM E-Value=5.1e-09)
          Length = 86

 Score =  115 bits (276), Expect = 5e-26
 Identities = 52/60 (86%), Positives = 57/60 (95%)
 Frame = +1

Query: 175 KAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLDRA 354
           KAIDLVTKATEEDK  NYEEAL+LYEHGVEYFLHA+KYEAQG++AKESIR+KC QYLDRA
Sbjct: 1   KAIDLVTKATEEDKAGNYEEALKLYEHGVEYFLHAIKYEAQGDKAKESIRSKCFQYLDRA 60


>SB_28977| Best HMM Match : AAA (HMM E-Value=0)
          Length = 442

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 41/110 (37%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
 Frame = +1

Query: 286 YEAQGERAKESIRAKCLQYLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 465
           YEAQG++AKESIR+KC QYLDRA                                     
Sbjct: 10  YEAQGDKAKESIRSKCFQYLDRAEKLKTYLRQKDKKKPVKAGGSSSTKTGGGKDDDDEDS 69

Query: 466 XXXX-----LQGKLEGAIVVEKPHVKWSDVXGXXXXXXXXXXXVILPIKF 600
                    L+G+L  AIV+EKP+VKWSD+ G           VILPIKF
Sbjct: 70  DSDNAESKKLKGQLNSAIVMEKPNVKWSDIAGLESAKEALKEAVILPIKF 119



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +2

Query: 599 FPHLFTGKRIPWKGILLF 652
           FPHLFTGKR PW+GILL+
Sbjct: 119 FPHLFTGKRTPWRGILLY 136


>SB_755| Best HMM Match : MIT (HMM E-Value=0.055)
          Length = 146

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +1

Query: 166 TLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYL 345
           +L+ AI ++ +A E D+ K+Y EAL  Y+ G+   L  VK     E  K   + +   Y 
Sbjct: 2   SLEAAISVLKRAVELDEGKSYSEALVCYQEGIGLLLQVVK-STTNEITKTRYKEQLNSYF 60

Query: 346 DRA 354
           +RA
Sbjct: 61  ERA 63


>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 625

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 166 TLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVK---YEAQGERAKESIR 324
           +++   +L  + TEE   K ++ AL+L +   EYF   V+   Y+    R KE IR
Sbjct: 555 SMESIRELNKRLTEEQAQKTFDRALKLEQEFGEYFTAIVQGDTYDELYNRVKEVIR 610


>SB_732| Best HMM Match : AAA (HMM E-Value=0)
          Length = 388

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 630 HGRASYYFGPPGTGKSILGKGWGLLKQT 713
           H +    FGPPGTGK+++ +  G +  T
Sbjct: 181 HVKGILLFGPPGTGKTLMARQIGTMLNT 208


>SB_39546| Best HMM Match : FCH (HMM E-Value=8e-13)
          Length = 360

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 178 AIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYL 345
           A+DL++K+  E      E+ ++L EH  +Y    +K E +   A   I +   Q+L
Sbjct: 11  AVDLLSKSGHEAILTQNEQEIKLLEHIRQYMGKRIKAELEYASALSKINSTASQFL 66


>SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1038

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 178 AIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYL 345
           A+DL++K+  E      E+ ++L EH  +Y    +K E +   A   I +   Q+L
Sbjct: 11  AVDLLSKSGHEAILTQNEQEIKLLEHIRQYMGKRIKAELEYASALSKINSTASQFL 66


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 630 HGRASYYFGPPGTGKSI 680
           HG+ S + GP GTGKS+
Sbjct: 733 HGKPSLFVGPTGTGKSV 749


>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 735 KPEKNVELFASVAPSLCQVWTYQYQGVQNNKMPFHGILLPVNKCGKFYW 589
           +P  NV L       L + W Y+++G   + MP    L+P+N+C  ++W
Sbjct: 376 RPRGNV-LKCDQKEILTKAW-YRFEGAAGSAMPTS--LVPINRCVCYHW 420


>SB_24598| Best HMM Match : Protamine_3 (HMM E-Value=1.4)
          Length = 407

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 199 ATEEDKNKNYEEALRLYEHGVEYFLHA 279
           A +E K   Y EAL +  HGVEY L A
Sbjct: 124 ALDEIKRTPYPEALSMKYHGVEYCLDA 150


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 636 RASYYFGPPGTGKSILGK 689
           R   +FGPPGTGK+++ +
Sbjct: 919 RGVLFFGPPGTGKTLVAR 936


>SB_16762| Best HMM Match : 7tm_2 (HMM E-Value=0.17)
          Length = 124

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 747 DQMMKPEKNVELFASVAPSLCQVWTYQYQGVQNNKMPFHGILLPVN 610
           D+  K  ++V++   + P L   W + +  V  N + FH I   VN
Sbjct: 66  DETTKVRRSVKVSVVLLPLLGITWVFGFLAVDKNLIAFHFIFAIVN 111


>SB_15952| Best HMM Match : TPR_1 (HMM E-Value=5.8e-11)
          Length = 672

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 172 QKAIDLVTKATEEDKNKNYEEALRLYE 252
           ++A+D+  K  +ED    YE ALR+YE
Sbjct: 582 KRALDIRLKNKQEDAIALYERALRIYE 608


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,588,517
Number of Sequences: 59808
Number of extensions: 318858
Number of successful extensions: 993
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)