Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0032
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  40   0.001
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)                 30   1.4  
SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)                    27   7.6  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
 Frame = +2

Query: 8   LLAAATAEVIHEGTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLE 178
           LL  A+  ++  G C  +  V   N+T+Y G WY++ S F  E   E+N  C +A+Y L 
Sbjct: 221 LLLFASFALLVCGPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLR 280

Query: 179 GD----VVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVXIL 337
            D    VV        DG  K I G A    D     KL V   F  +  +GS  IL
Sbjct: 281 KDGKIGVVNSNRDKKPDGELKQITGYA-YQPDPEVPGKLKV--HFDTVPVEGSYWIL 334


>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
          Length = 442

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 120 NFPTNLRRTANALQLNTNWKVTW*RSRTCISSTASRSI*KGR 245
           NF T      +AL++   W VTW R   C  +T S  +  GR
Sbjct: 33  NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74


>SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)
          Length = 508

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 110 EISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVK 226
           E+ ++  ESE+NGK SS    +  + V +K + + DG K
Sbjct: 38  EVFEWRFESEENGKMSSV-MTIHSNTVPLKEIGLWDGAK 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,654,750
Number of Sequences: 59808
Number of extensions: 223527
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)