Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0031
(800 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_3273| Best HMM Match : Neuromodulin (HMM E-Value=1.9) 31 1.1
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_13793| Best HMM Match : Helicase_C (HMM E-Value=5.6) 30 1.9
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.8
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 5.8
SB_39667| Best HMM Match : rve (HMM E-Value=9e-32) 28 7.7
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 339 QRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDI-PKVKKQSLQHLKSSVEEDFQFLSELA 515
QRFT NK+V + LS + ++ Y L +LD+ + +Q L+ +E E
Sbjct: 2053 QRFTGELNKIVLLLLSLTQRMHRYEKTLSELDMSEEADRQQRDILQEKIEYVKNQYEEAC 2112
Query: 516 ALKAVTEK 539
+K V +K
Sbjct: 2113 KIKEVNDK 2120
>SB_3273| Best HMM Match : Neuromodulin (HMM E-Value=1.9)
Length = 457
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3
Query: 306 DTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDL-DIPKVKKQSLQHLKSSV 482
DT D + HR +G + + +L D++L + VL + +I + SL ++ V
Sbjct: 32 DTIDPVVHRYEHAVHSGSHSSGSQSLP-GDEVLDWDQVLKRVREIEEAGTCSLGG-ETDV 89
Query: 483 EEDFQFLSELAALKAVTEKVESGAISADNIIDFYN 587
E+ + E ALK V E VESG S + D N
Sbjct: 90 SEESRVTVEEPALKRVKEAVESGDESIFEVDDDTN 124
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Frame = +3
Query: 186 DPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQR--FTNG- 356
DP + + VY+ + S ++ FK + Y + + E+ P TF V+K R +NG
Sbjct: 1251 DPVDPRWSAAVVYVEVLDSNDNAPVFKKQSYVVEMVEHSPTTFTVVKVEATDRDVGSNGR 1310
Query: 357 -GNKLVNINLSDSDQLLSYSNVL---GDLDIPKVKKQSL 461
+V+ N+ + + S S V+ D+D K+++ L
Sbjct: 1311 ISYSIVSGNVDGAFVIDSSSGVIKPAQDIDREKIQRYLL 1349
>SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3
Query: 306 DTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDL-DIPKVKKQSLQHLKSSV 482
DT D + HR +G + + +L D++L + VL + +I + SL ++ V
Sbjct: 364 DTIDPVVHRYEHAVHSGSHSSGSQSLP-GDEVLDWDQVLKRVREIEEAGTCSLGG-ETDV 421
Query: 483 EEDFQFLSELAALKAVTEKVESGAISADNIIDFYN 587
E+ + E ALK V E VESG S + D N
Sbjct: 422 SEESRVTVEEPALKRVKEAVESGDESIFEVDDDTN 456
>SB_13793| Best HMM Match : Helicase_C (HMM E-Value=5.6)
Length = 146
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +3
Query: 321 LKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDF-- 494
L+HR+ FT G+ VNIN+SD + + +VLG+ I + + L L+ +
Sbjct: 53 LRHRMGF-FTKSGD--VNINVSDVNNIAFSRSVLGNPTISRARGYQLHQLEDRAIHELLE 109
Query: 495 QFLSELAALKAVT-EKVESG 551
+ A + VT E+V SG
Sbjct: 110 HYGGRFNACELVTVERVPSG 129
>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 63 PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPE 206
PE S SGS + L FS ++ S +E+ W LL+TD +N P+
Sbjct: 405 PEMNSSSGSPSCLDVL--SCFSVNVASS-KESKFWCELLVTDKYNAPD 449
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 637 ELGPWKSRSACKELIRKL*KSMILSALIAPDSTFSVTAFKAASSLRNWKS 488
+L P KSR++ KE+ + +S + +L P T + SS NWKS
Sbjct: 317 KLNPQKSRASIKEIEGEHARSNSVVSLDVPQETCNTALVTHGSSPLNWKS 366
>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1273
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 261 FKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 422
FKS K P ++DE + D+LK + +F + +N DSD++ + +L
Sbjct: 1017 FKSTKNPPLIDELKDFEDDMLKMIQSVKFIEASSPFLNKLKEDSDRIKNKPKLL 1070
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = -3
Query: 171 HSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDYGGCLVR 40
H+I S++Q G + + +K + W++ ++T ++GG L++
Sbjct: 374 HNIVSTIQCAGNRRSDMNRVKKVKGLDWSEGAISTAEWGGALLK 417
>SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)
Length = 1845
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +3
Query: 369 VNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKVES 548
V + + +LL + + GD ++PK+ +S ++ + E F +E A +T+ + +
Sbjct: 1407 VELTTASKSKLLRFIFICGDFNLPKISWESQENTTGAKETAF---AEQLADYFLTQ-LNT 1462
Query: 549 GAISADNIIDFYNL----RINSLHAL 614
I DN++D +IN +H L
Sbjct: 1463 IPIRGDNVLDLVIASDPNQINDIHVL 1488
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,096,586
Number of Sequences: 59808
Number of extensions: 392910
Number of successful extensions: 1127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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