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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0010
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  

>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/56 (23%), Positives = 31/56 (55%)
 Frame = -1

Query: 677 NESNYIPDSVXLPFNII*RYLKIIESFLQLPKWTVSKLLISISNKNVRRIDFDVNA 510
           N +N   +S+ +  N     +KII++ +     T+ +++I+ +N N+  I  ++N+
Sbjct: 226 NVTNSHINSIMININSDINTIKIIDNIINSDMSTIIRIIINFTNSNINAIIININS 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,642,141
Number of Sequences: 59808
Number of extensions: 306373
Number of successful extensions: 493
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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