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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0001
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 40   7e-04
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 40   7e-04
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   39   0.001
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 37   0.007
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       36   0.012
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.012
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 36   0.012
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 36   0.012
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   35   0.021
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              28   3.2  
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 27   5.6  
SB_839| Best HMM Match : Spond_N (HMM E-Value=2.5)                     27   5.6  
SB_49842| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06)                   27   5.6  
SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)                   27   7.4  
SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)          26   9.8  
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)              26   9.8  
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)                    26   9.8  
SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)                  26   9.8  

>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 184 RASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFI- 360
           +A  A +E+ S       KF + LDV  F P+E+ VK   + + V  + E   +EHGF  
Sbjct: 9   KAPPATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFT 66

Query: 361 SRQF 372
           +RQF
Sbjct: 67  ARQF 70


>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 235 EKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
           +KF++  LDV++F P+EIT K  N  + V G  +  + E GF S++F
Sbjct: 4   DKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEF 49



 Score = 36.7 bits (81), Expect = 0.007
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 196 ARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFI-SRQF 372
           A  E+ +       KF + LDV  F P+E+ VK   + + V  + E   +EHGF  +RQF
Sbjct: 85  ATTENKAPATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQF 142


>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
 Frame = +1

Query: 235 EKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
           +K E+  LDV+ + P+EI++K  +  + ++GKH + + EHG+ + +F
Sbjct: 38  DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKH-KSEGEHGYETSEF 83


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +1

Query: 253 LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
           LDV+++ P+EI+ K  N  V V+G+H   + E GF  ++F
Sbjct: 12  LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEF 50



 Score = 34.7 bits (76), Expect = 0.028
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 232 KEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
           ++KF + +DV  F P+ I V+   N ++V   HE + + H      +RQF  P
Sbjct: 95  EDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGHYHAMHFNRQFVLP 147


>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
           +KF + +DV  F PD I V+   N ++V   HE + + H      +RQF  P
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLP 148



 Score = 35.9 bits (79), Expect = 0.012
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
           +KF + +DV  F PD I V+   N ++V   HE + + H      +RQF  P
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLP 382



 Score = 35.1 bits (77), Expect = 0.021
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +1

Query: 193 LARQESSSTINLTKEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQ 369
           L  + S   + L  ++ E+  LDV+++ P+EI+ K  N  V V+G+H   +   GF  ++
Sbjct: 225 LDEEVSCRLVYLQLDELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKE 283

Query: 370 F 372
           F
Sbjct: 284 F 284



 Score = 34.3 bits (75), Expect = 0.037
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 232 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
           + K E+  LDV+++ P+EI+ K  N  V V+G+H   +   GF  ++F
Sbjct: 4   ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEF 50


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
           +KF + +DV  F PD I V+   N ++V   HE + + H      +RQF  P
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLP 148



 Score = 34.3 bits (75), Expect = 0.037
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 232 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
           + K E+  LDV+++ P+EI+ K  N  V V+G+H   +   GF  ++F
Sbjct: 4   ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEF 50


>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
           +KF + +DV  F PD I V+   N ++V   HE + + H      +RQF  P
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLP 148



 Score = 34.3 bits (75), Expect = 0.037
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 232 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
           + K E+  LDV+++ P+EI+ K  N  V V+G+H   +   GF  ++F
Sbjct: 4   ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEF 50


>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
           +KF + +DV  F PD I V+   N ++V   HE + + H      +RQF  P
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLP 148



 Score = 34.3 bits (75), Expect = 0.037
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 232 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
           + K E+  LDV+++ P+EI+ K  N  V V+G+H   +   GF  ++F
Sbjct: 4   ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEF 50


>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 35.1 bits (77), Expect = 0.021
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 232 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
           + K E+  LDV+++ P+EI+ K  N  V V+G+H   +   GF  ++F
Sbjct: 5   ENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEF 51



 Score = 34.3 bits (75), Expect = 0.037
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
           +KF + +DV+ F P+ I V+   N ++V   HE + + H      +RQF  P
Sbjct: 97  DKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFILP 148


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +1

Query: 190 SLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTV 312
           S A+Q +S   +LT  K EV + V Q TP E   K SNN +
Sbjct: 396 SNAQQATSKEQHLTS-KGEVQVPVGQITPSEQASKTSNNAL 435


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 253  LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTPPVHPA 393
            L   Q TP      +    +  E K+EE  DEHG I R+ T   H A
Sbjct: 1165 LSTFQITPISQIPSSLTEKLQPETKYEEYVDEHGQIIRRTTKVKHTA 1211


>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 268 FTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTP 378
           FTP E++VK + NT+++    +++       S Q TP
Sbjct: 368 FTPQELSVKPALNTILIPPHAQQRVSSGSGTSGQGTP 404


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 208 SSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH 351
           +S  +NLT +   +  D    T D++ + + N  +  +G H    D H
Sbjct: 360 TSDDVNLTSDDVHLTSDGVHLTSDDVHLTSDNVHLTSDGVHLTSDDVH 407


>SB_839| Best HMM Match : Spond_N (HMM E-Value=2.5)
          Length = 873

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 291 QGVEQHGCRRRQARGETGRARLH 359
           +G+   GCRRRQ +G+   + LH
Sbjct: 313 EGLYSGGCRRRQGKGQRYDSHLH 335


>SB_49842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 197 AKLALQGLKYEFLKSEVEGNELMEDNRSSF 108
           AK +L  + YE+  S  E  E + +NR +F
Sbjct: 26  AKDSLSKIAYEYFSSGAENEETLRENREAF 55


>SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06)
          Length = 659

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 175 RPWRASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH 351
           R  RA+  R      ++LTK + E+I+D  +F    I +    N    + K E   D+H
Sbjct: 468 RMLRANFIRAMDMCCLDLTKREIEIIMDRMKFIMMMIVMYDGEND--EDDKDEGDDDDH 524


>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
          Length = 280

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 157 FRNSYFRPW--RASLARQESSSTINLTKEKFEVIL 255
           FR  YFR W  R S+ R  SSS+ N++KE F+V++
Sbjct: 75  FRRRYFRHWSIRKSM-RCFSSSSRNVSKE-FDVVI 107


>SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 111 LLQTHAEVLVQ*SGGALDTLPVIPPIAKH 25
           L QTH  V  Q     + T+PVIPPI+++
Sbjct: 72  LQQTHTRVESQLPTCTVTTVPVIPPISQN 100


>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
          Length = 592

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 267 IHSRRDHGQGVEQHGCRRRQARGETGRARLHFPSV 371
           +  RR+H  GV    CR RQ      R R H P V
Sbjct: 504 VRERRNH-PGVAIRRCRTRQVSQRGERERRHHPGV 537


>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
          Length = 565

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
 Frame = +3

Query: 282 DHGQGVEQHGCRRR--QARGETGRARLH------FPSVHPAGTSCRP 398
           +HG  V      R   Q +GETGR  LH       P +H  G + RP
Sbjct: 330 EHGSHVSDENATRPGFQGKGETGRPGLHGDGKTRRPGLHGDGKTSRP 376


>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
          Length = 436

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 325 KHEEKQDEHGFISRQFT 375
           KHEE++D HG++  + T
Sbjct: 72  KHEEREDRHGYLKDKVT 88


>SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
          Length = 313

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 131 MEDNRSSFFRPMPKCWSSSL 72
           M+D R +FFR + KCW  S+
Sbjct: 224 MKDFRQTFFRWLIKCWRRSV 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,119,507
Number of Sequences: 59808
Number of extensions: 185094
Number of successful extensions: 533
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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