Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0073
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)      143   1e-34
SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)             137   7e-33
SB_19115| Best HMM Match : No HMM Matches (HMM E-Value=.)             110   9e-25
SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)                    78   7e-15
SB_9847| Best HMM Match : No HMM Matches (HMM E-Value=.)               61   7e-10
SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)           56   3e-08
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   8e-08
SB_3587| Best HMM Match : No HMM Matches (HMM E-Value=.)               53   2e-07
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           52   6e-07
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               31   1.1  
SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        28   7.9  
SB_43994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)
          Length = 293

 Score =  143 bits (347), Expect = 1e-34
 Identities = 67/82 (81%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
 Frame = +3

Query: 12  RSASLLFXKSF-GKFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 188
           R  S  F      KFL KH+ DLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG
Sbjct: 186 RGVSFTFGPDIVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 245

Query: 189 ALMSVDETLMCSFQILKPADKR 254
           A+MSVDETLMCSFQILKPADK+
Sbjct: 246 AMMSVDETLMCSFQILKPADKK 267



 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 260 YSGLNMGRPNTPPRAQPKNKK 322
           Y GLN GRP TPPR Q +  K
Sbjct: 271 YGGLNSGRPVTPPRGQQQKAK 291


>SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  137 bits (332), Expect = 7e-33
 Identities = 59/70 (84%), Positives = 68/70 (97%)
 Frame = +3

Query: 48  KFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDETLMCSF 227
           KFL++H+ DLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG +MSVD+TLMCSF
Sbjct: 107 KFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDDTLMCSF 166

Query: 228 QILKPADKRS 257
           QILKP++K++
Sbjct: 167 QILKPSEKKA 176



 Score = 34.3 bits (75), Expect = 0.091
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 233 PEAGRQAQLYSGLNMGRPNTPPRAQPKNKK 322
           P   +    Y GLN GRP TPPR  P+NKK
Sbjct: 171 PSEKKAKYQYGGLNSGRPVTPPRG-PQNKK 199


>SB_19115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score =  110 bits (265), Expect = 9e-25
 Identities = 50/78 (64%), Positives = 62/78 (79%)
 Frame = +3

Query: 24  LLFXKSFGKFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSV 203
           ++F +   + L +   D      +VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG +MSV
Sbjct: 16  VIFGEKLAEKLERTARDSTLYYRKVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSV 75

Query: 204 DETLMCSFQILKPADKRS 257
           D+TLMCSFQILKP++K++
Sbjct: 76  DDTLMCSFQILKPSEKKA 93



 Score = 34.3 bits (75), Expect = 0.091
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 233 PEAGRQAQLYSGLNMGRPNTPPRAQPKNKK 322
           P   +    Y GLN GRP TPPR  P+NKK
Sbjct: 88  PSEKKAKYQYGGLNSGRPVTPPRG-PQNKK 116


>SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)
          Length = 465

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 40/67 (59%), Positives = 45/67 (67%)
 Frame = +3

Query: 48  KFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDETLMCSF 227
           ++L K+ F L+ RAHQ             LVTLFSAPNYCGEFDNAG +MSV E LMCSF
Sbjct: 159 EYLEKYGFSLVVRAHQ-------------LVTLFSAPNYCGEFDNAGGVMSVGENLMCSF 205

Query: 228 QILKPAD 248
            ILKP D
Sbjct: 206 SILKPGD 212


>SB_9847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 26/66 (39%), Positives = 43/66 (65%)
 Frame = +3

Query: 48  KFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDETLMCSF 227
           ++ + ++ DLICRAHQ+V +GY++     ++T++SAPNYC    N  A++ +DE L   F
Sbjct: 45  QYNAANDIDLICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLKREF 104

Query: 228 QILKPA 245
            I + A
Sbjct: 105 TIFEAA 110


>SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)
          Length = 199

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 12  RSASLLFXKSFGK-FLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 188
           R A   F +   + F   +   LI RAHQ+V +GY +   R +VT+FSAPNYC    N  
Sbjct: 127 RGAGYTFGQDISETFNHTNGLTLITRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQA 186

Query: 189 ALMSVDETLMCS 224
           A+M +D+ L  S
Sbjct: 187 AIMELDDALKYS 198


>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 23/60 (38%), Positives = 36/60 (60%)
 Frame = +3

Query: 48  KFLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDETLMCSF 227
           KF   +  +LI R+H+V  +GYE     + +T+FSAPNYC +  N GA +++ + L   F
Sbjct: 389 KFCKDNGLELIIRSHEVKPEGYEVMHDGKCITIFSAPNYCDQMGNKGAFITMGDDLKPKF 448


>SB_3587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 35/53 (66%)
 Frame = +3

Query: 51  FLSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDE 209
           F+  +   LICRAHQ+V +GY++    +LVT++SAPNYC    N  ++++  +
Sbjct: 1   FVHINNLKLICRAHQLVHEGYKYMFDEKLVTVWSAPNYCYRCGNIASILAFSD 53


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 20/50 (40%), Positives = 33/50 (66%)
 Frame = +3

Query: 54  LSKHEFDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSV 203
           L KH F+L+ R+H+   +GYE+   ++++T+FSA NY  +  N GA M +
Sbjct: 155 LRKHNFELLVRSHECKYEGYEYMHNKKVITIFSASNYYEQGSNRGAYMKI 204


>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 1093

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 481 SHKDGQL-A*SPRYQAINSKKKRRAEIASKRYPVTERHLNN 600
           SHK   L A +PRY+ + + K    +IA+ R  VT RH  N
Sbjct: 61  SHKSSTLVAATPRYENMLTSKPDTTKIATSRTEVTPRHSEN 101


>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -1

Query: 478 LLGCQTLTLMHSIKETKIH*NINPFKVF*VYSGE 377
           +LGC  LT  H  K  KI   I   KVF V SG+
Sbjct: 241 ILGCAQLTCKHKDKSLKIKCYIAKNKVFSVLSGQ 274


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 101  DDLVRATDQVELVFGQELAKRLRKQK 24
            D L+RA D V+  FG  LAK LR+ K
Sbjct: 4862 DALMRAIDGVQWTFGYSLAKGLRELK 4887


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -3

Query: 215  QRLVHGHQGACIIKLPAVVWCREECDELPLRKELVSILDD-LVRATDQVE-LVFGQELA- 45
            QR   G QG C      +   +EEC +  ++ E + + +D LV +    E  +F QE A 
Sbjct: 1254 QREASGAQGKCDTLEKELFKTKEECSDWIMKYESIQMHNDTLVESLKSCENKIFAQEEAM 1313

Query: 44   KRLRKQK 24
            + L+K+K
Sbjct: 1314 QTLKKEK 1320


>SB_43994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 227 PDPEAGRQAQLYSGLNMGRPNTPPRAQPKNKKN 325
           P P  G Q +  +      PN P R +PK  KN
Sbjct: 311 PKPPPGEQPESTTPQEPSDPNKPKRGRPKGSKN 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,524,426
Number of Sequences: 59808
Number of extensions: 462029
Number of successful extensions: 1263
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)