Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0054
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_566| Best HMM Match : Keratin_B2 (HMM E-Value=9)                    56   3e-08
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.039
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)                     31   0.83 
SB_24101| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  

>SB_566| Best HMM Match : Keratin_B2 (HMM E-Value=9)
          Length = 258

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
 Frame = +2

Query: 8   HEDYLVPXXMLXKAN-IFDICYADSNRSCCFTKAYTHYVEGTGSV 139
           +E +L+P  +L + + + DI  A S RSCCFTKAY HY EGTGSV
Sbjct: 207 YEQFLLPTKVLSRFSLVLDIVTAKSRRSCCFTKAYGHYAEGTGSV 251


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +1

Query: 247  VL*SKEILQLMSFPSEYSFPKTVTRKQCYRLLGNSVNVKVISELLQILFD 396
            +L   E+ +L  FPS Y+    + R Q  RLLGN+ +V V+  LL  L D
Sbjct: 1665 ILWCTEMERLFGFPSHYTDVNNMGRTQRQRLLGNAWSVPVVRHLLSPLKD 1714


>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
          Length = 1470

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 652  KRSCNVISLNVEHVTCTPCAYDSTLTLL 569
            +R C+++  N+ H TCT C++ ST  L+
Sbjct: 1437 RRGCSIVESNLTHTTCT-CSHMSTFALI 1463


>SB_24101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -2

Query: 586 STLTLLNFFFV*EIRKNIASNNM*LKILTLH*STIINKMLLLSFQFKYKKKLQYIYRNYY 407
           S L L + FF+ E+    A+N+M L   + H  + +  +++  F  +Y KK Q   RN +
Sbjct: 20  SMLALTSSFFLVELIVGYATNSMALVADSFHMLSDVMSLIIGYFALRYSKKSQRTERNTF 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,117,782
Number of Sequences: 59808
Number of extensions: 303368
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)