Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0044
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1476| Best HMM Match : RVT_1 (HMM E-Value=5.49309e-43)              30   1.5  
SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_36079| Best HMM Match : Peptidase_C48 (HMM E-Value=0.097)           28   7.7  
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        28   7.7  

>SB_1476| Best HMM Match : RVT_1 (HMM E-Value=5.49309e-43)
          Length = 1078

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 631  IRDXIRKAKLHGEILVIGHATPSYTRGHIATVGDRGKLPQMGKMKFW 491
            I D  RKAKL        + TP  T   + +  DR   P   +++FW
Sbjct: 1015 IHDEERKAKLQNTEKPAKNPTPENTHHMLQSCNDRESSPDANRLQFW 1061


>SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 293 AKNKKKTKSLLFSIFHIIAHMIIWKEKNIYIFVSFHFF*SSLKSQRFYRSFTSIYTF 463
           A++ K+T+ +L S   ++ H  +  + NIYI +    +    K +RFY   T  + F
Sbjct: 261 ARSSKRTEGVLLSTVDLVKHDGLQPDANIYIAILGKVY-DVEKGRRFYGPGTGYHVF 316


>SB_36079| Best HMM Match : Peptidase_C48 (HMM E-Value=0.097)
          Length = 796

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 301 QKKNEIASFQHLSYYSPHDNLERKKYIYFRFISFLLIEFKITTIL*KFHF 450
           Q+ ++    QHLSY    D L   K   + + S +L + K  T + K H+
Sbjct: 255 QQWDDEGELQHLSYAVVSDELSHDKSSVYAYNSLILEDVKKVTEVKKVHY 304


>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 413 SLKSQRFYRSF--TSIYTFYTQKFHFYPPKFHFTHL 514
           S KSQ F      + + T    +F+F+PPK  +THL
Sbjct: 552 SPKSQLFITLLIISPVLTITLLEFYFHPPKIKYTHL 587


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,904,695
Number of Sequences: 59808
Number of extensions: 453699
Number of successful extensions: 903
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)