Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0024
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26651| Best HMM Match : Pox_A32 (HMM E-Value=0.0093)                32   0.35 
SB_48643| Best HMM Match : DUF663 (HMM E-Value=0)                      30   1.4  
SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)             29   4.3  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               29   4.3  
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_22366| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19)                   28   7.6  
SB_54654| Best HMM Match : rve (HMM E-Value=0.0035)                    28   7.6  

>SB_26651| Best HMM Match : Pox_A32 (HMM E-Value=0.0093)
          Length = 320

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 617 LSPTSSPFRDDDLAVPILGRPQDRSTRALAPNVSSTCPPARARGPD-SLW 471
           L+  + PFRD+   V     P    T+ L  +   +C   RARG D S W
Sbjct: 134 LTSIAKPFRDNVACVVTFHNPSQIGTKTLFEDYGDSCHAVRARGADPSKW 183


>SB_48643| Best HMM Match : DUF663 (HMM E-Value=0)
          Length = 450

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 127 SAICSEPDNLLFLMSATNLPTVSMCFS 47
           S++CS  DN  FL+  + LP  S+CF+
Sbjct: 36  SSLCSVRDNPEFLVFCSGLPVTSLCFA 62


>SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)
          Length = 723

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 548 RSTRALAPNVSSTCPPARARGPDSLWTXSLSPARFXALRCDLL*VPSSPDP 396
           R  R +   ++S+ P  R     +L T S +P     L  D+L V +SPDP
Sbjct: 480 RFIRCIYNLLNSSSPAVRYEAAGTLVTLSSAPTAVKELVMDILRVLASPDP 530


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 39  ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEKIISESNATARELCGVLR 203
           +  E H ET  +FV  +  NK+  +EQ+       +E  I+ SN    +  G L+
Sbjct: 576 DYKEYHTETRVRFVITMAENKMREAEQVGLHKKFKLEATINTSNMVLFDAMGCLK 630


>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +1

Query: 343  SPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAXNRAGDNEXVHNESGPRARAGGQVLLT 522
            S  +GSG  GP    +  G G+ G  K + +             N + P A  GG     
Sbjct: 847  SAAAGSGSQGPFASTSVGGQGIFGAAKPAPQPTPAPTAGGFSFGNPAAPAATTGG---FK 903

Query: 523  FGAS 534
            FGAS
Sbjct: 904  FGAS 907


>SB_22366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 581 LAVPILGRPQDRSTRALAPNVSSTCPPARARGPDSLWTXSLSPARF 444
           L +P   R +  S  +L+ + S   PPAR R  D+L    +SP  F
Sbjct: 172 LHIPPASRKRSSSRPSLSRHASYGSPPARIREEDALERPPVSPNVF 217


>SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19)
          Length = 674

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 645 LLSLXRHGVTLADVQSLPRRRPCSSYSGS 559
           LLS+ +H +    ++  P +RPC+ YS S
Sbjct: 482 LLSVCQHPIFATRLKLRPHKRPCAYYSNS 510


>SB_54654| Best HMM Match : rve (HMM E-Value=0.0035)
          Length = 466

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 519 HVRGQRSGRAVLRPTQNRNCKVVVAEGTGRRRESRH 626
           HVR  R G    + +  R+C+V+   G+  RR  RH
Sbjct: 221 HVREGRFGEVQEKLSNPRSCQVLTDAGSSVRRNRRH 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,231,796
Number of Sequences: 59808
Number of extensions: 439013
Number of successful extensions: 1449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)