Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0006
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)                    56   2e-08
SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0)               46   2e-05
SB_9856| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.55 
SB_56019| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_37554| Best HMM Match : GED (HMM E-Value=0.52)                      29   2.9  
SB_47034| Best HMM Match : GED (HMM E-Value=0.52)                      29   3.9  
SB_36805| Best HMM Match : GED (HMM E-Value=0.24)                      29   3.9  
SB_20011| Best HMM Match : GED (HMM E-Value=0.65)                      29   3.9  
SB_8380| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_24060| Best HMM Match : GED (HMM E-Value=0.52)                      29   3.9  
SB_19038| Best HMM Match : GED (HMM E-Value=0.52)                      29   3.9  
SB_10| Best HMM Match : Complex1_24kDa (HMM E-Value=4.4)               29   3.9  
SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           28   5.1  
SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)              28   5.1  
SB_40628| Best HMM Match : PCNA_N (HMM E-Value=8.4)                    28   6.8  
SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)                   28   6.8  
SB_37513| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)
          Length = 757

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 27/128 (21%)
 Frame = +1

Query: 10  RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHL------------------ 135
           +GLDIVR DW  LA +AG ++LSQILS Q+ +  ++++ + L                  
Sbjct: 8   KGLDIVRRDWCDLAKDAGNYVLSQILSAQSREAIVDNVHDFLITSEFVWILDQLCYPSSY 67

Query: 136 -----NKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHVQWH*GLTVKT----VG 288
                + + +D+ G K+ L    I KQLTK P++Y DK +  HV     L  K+    VG
Sbjct: 68  DDLFWSTVGEDVKGGKVDLQKYVINKQLTKAPHDYPDKKSLPHVHVALWLMSKSRKVGVG 127

Query: 289 DSKKATLC 312
           D+    +C
Sbjct: 128 DTIPYVIC 135



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +3

Query: 255 VALRLNSKNSRRFKKGDIVPYIICE 329
           VAL L SK SR+   GD +PY+IC+
Sbjct: 113 VALWLMSK-SRKVGVGDTIPYVICD 136


>SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0)
          Length = 852

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/81 (33%), Positives = 43/81 (53%)
 Frame = +1

Query: 10  RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
           +G++ VR D   L A      L ++L E+ P   +E    +  ++  DL+ N++ +S L 
Sbjct: 694 KGIETVRRDNCPLVANLINACLKKLLIERNPQGAVE----YTKQVISDLLCNRIDISQLV 749

Query: 190 ITKQLTKNPNEYADKHTQSHV 252
           ITK+LTK   EYA K   S +
Sbjct: 750 ITKELTKTGEEYAGKQAHSEL 770



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 294 KKGDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPIE 470
           K GD VPY+I        A ++A   I  L+N+  + +D  YYL +QL   + RI EPI 
Sbjct: 784 KLGDRVPYVIIAGAKGAKAYEKAEDPIYVLENN--VPIDTGYYLENQLSKPLLRIFEPIL 841

Query: 471 GMDPARVA 494
           G   A  A
Sbjct: 842 GESKASSA 849


>SB_9856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 309 VPYIICEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICEPIEGMD 479
           VPY++          Q     EE+   E L+V+  YY+  Q+ P + R+   I G+D
Sbjct: 53  VPYVVVYGSPGLPLIQLVKRPEEVLQDERLRVNASYYITKQILPPLHRVFSLI-GVD 108


>SB_56019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 169 MPLSVLAITKQLTKNPNEYADKHTQSHVQWH*GLTVKTVGD 291
           +P+    + K +TK  NEY  K  Q H+  + G +++ + D
Sbjct: 223 LPIRTSKLLKSITKTVNEYFMKQVQRHIDSNDGKSIRDLTD 263


>SB_37554| Best HMM Match : GED (HMM E-Value=0.52)
          Length = 187

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 461
           C DG  N A  R      L  +EH K  F + + HQL+  I+  C+
Sbjct: 128 CYDGAGNMAG-RLNGASSLIRAEHEKAIFAHCMNHQLNLCIANTCQ 172


>SB_47034| Best HMM Match : GED (HMM E-Value=0.52)
          Length = 238

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 461
           C DG  N A  R      L  +EH K  F + + HQL+  I+  C+
Sbjct: 191 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 235


>SB_36805| Best HMM Match : GED (HMM E-Value=0.24)
          Length = 377

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 461
           C DG  N A  R      L  +EH K  F + + HQL+  I+  C+
Sbjct: 318 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 362


>SB_20011| Best HMM Match : GED (HMM E-Value=0.65)
          Length = 427

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 461
           C DG  N A  R      L  +EH K  F + + HQL+  I+  C+
Sbjct: 331 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 375


>SB_8380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 461
           C DG  N A  R      L  +EH K  F + + HQL+  I+  C+
Sbjct: 77  CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 121


>SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 461
           C DG  N A  R      L  +EH K  F + + HQL+  I+  C+
Sbjct: 218 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 262


>SB_24060| Best HMM Match : GED (HMM E-Value=0.52)
          Length = 297

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 461
           C DG  N A  R      L  +EH K  F + + HQL+  I+  C+
Sbjct: 238 CYDGAGNMAG-RLNGASSLIRAEHEKTIFVHCMNHQLNLCIANTCQ 282


>SB_19038| Best HMM Match : GED (HMM E-Value=0.52)
          Length = 250

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 461
           C DG  N A  R      L  +EH K  F + + HQL+  I+  C+
Sbjct: 191 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 235


>SB_10| Best HMM Match : Complex1_24kDa (HMM E-Value=4.4)
          Length = 285

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 461
           C DG  N A  R      L  +EH K  F + + HQL+  I+  C+
Sbjct: 169 CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 213


>SB_52972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 324 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRICE 461
           C DG  N A  R      L  +EH K  F + + HQL+  I+  C+
Sbjct: 175 CYDGAGNMAG-RFNGASSLIRAEHEKAIFVHCMNHQLNLCIANTCQ 219


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 139 KLKDDLIGNKMPLSVLAITKQLTKNPNE--YADKHTQSHVQWH*GLTVKT 282
           K++DD++GN + L+     + + +N N+    D  +QS+V  + GL + T
Sbjct: 386 KMEDDVMGNDVGLAAALAMESMKENENDDSSGDADSQSNVANNDGLALPT 435


>SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)
          Length = 731

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 342 NSATQRAYHIEELKNSEHLKVDFKYYLAH 428
           NSAT  A H + L ++  L VDFK  LA+
Sbjct: 76  NSATHAALHNKRLTSNNVLNVDFKSTLAY 104


>SB_40628| Best HMM Match : PCNA_N (HMM E-Value=8.4)
          Length = 188

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 324 CEDGTANSATQRAYHIEELKNSEHLKVDFKYYLAHQLHPVISRIC 458
           C DG  N A  R      L  +EH K  F + + HQL+  I+  C
Sbjct: 68  CYDGAGNMAG-RLNGASSLIRAEHEKAIFVHCMNHQLNLCIANTC 111


>SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)
          Length = 731

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 106 DRLESIQNHLNKLKDDLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHVQWH*G 267
           D L  + +   K+KD + GN   LS  +IT+Q+ +     A+  T   V+W+ G
Sbjct: 56  DGLRQLASRPVKIKDRMFGNTWALSNASITEQVQR----IANLTTSMDVEWNPG 105


>SB_37513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 3   FGTRFRH--RPFRLVXTGRRGREI 68
           FG R RH  RPFRL   G+RG  I
Sbjct: 64  FGRRLRHHPRPFRLRVRGKRGIHI 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,335,066
Number of Sequences: 59808
Number of extensions: 359662
Number of successful extensions: 1034
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)