Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b06
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)              29   2.3  
SB_56321| Best HMM Match : DM (HMM E-Value=3.2)                        27   7.2  
SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_14955| Best HMM Match : CTP_transf_3 (HMM E-Value=8)                27   9.5  
SB_2076| Best HMM Match : Sushi (HMM E-Value=1.4)                      27   9.5  
SB_51411| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_19372| Best HMM Match : zf-C2HC_plant (HMM E-Value=9.3)             27   9.5  

>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
          Length = 1120

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 308 RVLQLISVQHHNGQTIAIATHRTFNYTVIFQICIINVFHVPLFERVRNKQYIS 150
           R L +ISV+H      A+  HR  N   +  I + +V       R+RNK+Y+S
Sbjct: 832 RRLSVISVRH---VCTAVCLHRIRNKRRLSVISVRHVCTAVCLHRIRNKRYLS 881


>SB_56321| Best HMM Match : DM (HMM E-Value=3.2)
          Length = 270

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 248 HRTFNYTVIFQICIINVFHVPLFERVRNKQY 156
           H  +++  + Q  +I++ HVP+ ERV+ +QY
Sbjct: 3   HNDWDWRTLCQDFMIDI-HVPVLERVKEEQY 32


>SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 248 HRTFNYTVIFQICIINVFHVPLFERVRNKQY 156
           H  +++  + Q  +I++ HVP+ ERV+ +QY
Sbjct: 54  HNDWDWRTLCQDFMIDI-HVPVLERVKEEQY 83


>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 166 TSNTLAVRCIMLKINSADAELYRPRFIFCA 77
           TSN  AV C +  IN    EL +P F  CA
Sbjct: 420 TSNGNAVACQVKAINMTVRELVKPMFSACA 449


>SB_14955| Best HMM Match : CTP_transf_3 (HMM E-Value=8)
          Length = 437

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 216 LKNYSVIEGAMCCNGDCLAVVVLDRNQLQNTDMEV 320
           L++YS+ +G+  C GD L   V DR+ L   +M +
Sbjct: 365 LQDYSIKDGSEGCLGDPLNSPVHDRDDLGEIEMNL 399


>SB_2076| Best HMM Match : Sushi (HMM E-Value=1.4)
          Length = 197

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +3

Query: 105 NSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNYSVIE--GAMCCNGDCLAVV 278
           NSA+ EF F       N     N ++   ++ I N++L NY++ E    + C  + + V 
Sbjct: 88  NSAAKEFTFYTGACAGNDDAALNQIRHNFLEAIKNSHLANYALCEVSQGLDCVVENVKVY 147

Query: 279 VLDRNQLQNTDMEVLESLEYTSDNVE 356
             +R++  N   + + S ++  ++++
Sbjct: 148 CGERSKRSNDPPQRIISFDFVINDLK 173


>SB_51411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +3

Query: 66  KCLVAQKINLGLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNYSVIEGA 245
           K L AQ  N  L++    +++FN+ +   +V+ +PN+L  R    I+      YS   G 
Sbjct: 25  KKLTAQDWNNVLFSDKCHKYLFNLPNPKNDVVWLPNSLWSR----IFRRQKDEYSA--GF 78

Query: 246 MCCNGDCLAVV 278
           +C    C A +
Sbjct: 79  LCDGESCGAEI 89


>SB_19372| Best HMM Match : zf-C2HC_plant (HMM E-Value=9.3)
          Length = 156

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 158 YISRQMHNVKNKLGRRRVI*TQVYFLRNQAFCASHHTLHTQL 33
           YISR+ H + N+LG+ +    Q   + N    A+ H   TQL
Sbjct: 63  YISRKKHCITNRLGKAK----QEKIIMNPPLLANIHKQSTQL 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,736,491
Number of Sequences: 59808
Number of extensions: 308626
Number of successful extensions: 873
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)