Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0033
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1733| Best HMM Match : ATP-synt_C (HMM E-Value=4.5)                 96   3e-20
SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)                    48   7e-06
SB_15812| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_31672| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    29   3.3  
SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_5263| Best HMM Match : C1_1 (HMM E-Value=1)                         28   5.8  
SB_36841| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)                  28   7.7  
SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  
SB_56830| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         28   7.7  
SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)                      28   7.7  

>SB_1733| Best HMM Match : ATP-synt_C (HMM E-Value=4.5)
          Length = 168

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 47/72 (65%), Positives = 56/72 (77%)
 Frame = -2

Query: 496 IPQYVVMTMGEVMFSVTGLEFSFTQAPASMKSVLQSVWLLTVAFGNLIVVLIVEGNFLDA 317
           IPQYVV+T  EVMFSVTGL F+++QAP SMKSVLQS WLLTVAFG+LIVV++     +  
Sbjct: 44  IPQYVVITAAEVMFSVTGLGFAYSQAPNSMKSVLQSFWLLTVAFGDLIVVILSSAKPVKG 103

Query: 316 QWKEFFLFAGLM 281
             KE FL+ GLM
Sbjct: 104 VEKEMFLYGGLM 115


>SB_21872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 18/56 (32%), Positives = 38/56 (67%)
 Frame = -2

Query: 520 NSIHILWLIPQYVVMTMGEVMFSVTGLEFSFTQAPASMKSVLQSVWLLTVAFGNLI 353
           + + I + +PQ++++   EV  S+TGLEF+++QAP  ++ ++  ++L+T   GN +
Sbjct: 432 SDMSIFYQVPQFMLIGTSEVFTSITGLEFAYSQAPRCLQGLVMGIFLVTSGLGNYL 487


>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
          Length = 606

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 18/53 (33%), Positives = 36/53 (67%)
 Frame = -2

Query: 511 HILWLIPQYVVMTMGEVMFSVTGLEFSFTQAPASMKSVLQSVWLLTVAFGNLI 353
           +ILW +PQY ++ M EV  S+TGLE  ++  P++ +SV  +++ + +  G+++
Sbjct: 457 NILWQMPQYALLGMSEVFASMTGLEIVYSLCPSTPQSVTSAIYNIMICIGSIL 509


>SB_15812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/54 (37%), Positives = 36/54 (66%)
 Frame = -2

Query: 514 IHILWLIPQYVVMTMGEVMFSVTGLEFSFTQAPASMKSVLQSVWLLTVAFGNLI 353
           + I++ IPQY ++ + EV  SV GLEF++ +AP SM+S +  ++    + G+L+
Sbjct: 34  LSIMYQIPQYGLIGVSEVFASVGGLEFAYREAPPSMQSFVMGLFFFVQSIGSLL 87


>SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = -2

Query: 517 SIHILWLIPQYVVMTMGEVMFSVTGLEFSFTQAPASMKSVLQSVWLLT-VAFGNLIVVLI 341
           S H L L    V M  G++      L     + P  +   + SV +LT V  GNL+V  I
Sbjct: 608 SDHWLQLSTLMVTMVNGQIAML---LRLPVDEVPPEIDREVDSVGVLTLVLMGNLLVAFI 664

Query: 340 VEGNFLDAQWKEF-FLFAGLMLLDMFSFSRRWRSDTSTWITIEHRG 206
             G+ L A W      F  L     + FS R  +D+     +E  G
Sbjct: 665 AAGSLLYAVWPLLKKAFISLCRNRGYEFSDRQSNDSEDETLVEDDG 710


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 259 SRRWRSDTSTWITIEHRGGYCR*RDQMPENHIHKRH 152
           S  W  D+  W+TIE  GG     D    NH+   H
Sbjct: 575 SLAWSGDSPLWMTIEQAGGVPSCEDVTIPNHVEAAH 610


>SB_31672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 599 WSSLHYQCLRRHGRCLSSKSSDYN--STK*YTHSLVDTSVRCDDYGRSDVF 453
           WS L  QCLR  GR L S   D    ST+ Y H++   +   D +  S  F
Sbjct: 4   WSGLTEQCLRFFGRSLRSLGPDGRVISTRWYLHTIAQGTTPPDMHDTSFCF 54


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +3

Query: 228 HVLVSERHRRENENMSNNIRPANKKNSFH*ASKKFPSTMRTTIKFPKATVRSQT 389
           +++V+ R R++N   +NN +     +S    +    S+++   K PK+ +R++T
Sbjct: 720 NLIVNSRKRKKNIKKTNNNKNTRSSSSSPCHAAPLRSSLKPCFKEPKSLIRTET 773


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +3

Query: 261  NENMSNNIRPANKKNSFH*ASKKFPSTMRTTIKFPKATVRSQTDCSTDFILAGACVKENS 440
            N    +N +P +KK++      K  S  +TT   P     S T   T    +      NS
Sbjct: 3077 NNKEQHNSKPNHKKSTRPTTDNKQQSQPQTTTAEPITKTTSTTAKPTTNNNSKPTTNNNS 3136

Query: 441  KPVTENITSP 470
            KP T N + P
Sbjct: 3137 KPTTNNNSKP 3146


>SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +3

Query: 363 PKATVRSQTDCSTDFILAGACVKENSKPVTENITSPIVITTY*GINQRMCILF 521
           P A     T  S D   A AC  EN     E+   PIV +TY    ++ C+LF
Sbjct: 158 PLAYFVHDTLSSIDHQKADACKNENG--AQESYNCPIVYSTYSRTCEKHCVLF 208


>SB_5263| Best HMM Match : C1_1 (HMM E-Value=1)
          Length = 407

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 235 STWITIEHRGGYC 197
           STWITI+++ GYC
Sbjct: 377 STWITIKYKSGYC 389


>SB_36841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = -3

Query: 60 LPRADSCSPGDP 25
          +PR++SCSPGDP
Sbjct: 1  MPRSNSCSPGDP 12


>SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)
          Length = 788

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 596 SSLHYQCLRRHGRCLSSKSSDYNST--K*YTHSLVDTSVRCDDYGRSDVFSNW 444
           +SL  +  R+HG  L S++  Y +      T + ++  + CDD+   DV+  W
Sbjct: 154 NSLFERVERQHGHVLVSRALGYVTAAKSGLTETELEDLLSCDDFVLDDVYQYW 206


>SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 63 SLPRADSCSPGDP 25
          S PR++SCSPGDP
Sbjct: 19 SRPRSNSCSPGDP 31


>SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1037

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -2

Query: 289 GLMLLDMFSFSRRWRSDTSTWITIE 215
           G+  +++F ++R  R++ STW+TI+
Sbjct: 569 GIFNVELFCWNRLSRAEASTWVTIQ 593


>SB_56830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 343 IVEGNFLDAQWKEFFLFAGLMLLDMFSFSRR-WRSDTSTWITIEHRGG 203
           IV  NF D  +KE F+    +  D  +F  + + S    W+T++ RGG
Sbjct: 90  IVSNNFWDPLFKEKFV----LQYDCSNFDPKFYNSSEPLWLTVQKRGG 133


>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 420 ACVKENSKPVTENITSPIV 476
           +CVKE S P+ +++TSPI+
Sbjct: 408 SCVKEKSHPLRKSLTSPIL 426


>SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)
          Length = 179

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 24 MDPPGCRNRHEGERERTSLE 83
          +DPPGCRN  + + E+ S+E
Sbjct: 16 VDPPGCRNSIKDKGEKESME 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,598,751
Number of Sequences: 59808
Number of extensions: 422082
Number of successful extensions: 2101
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2100
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)