Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0026
         (343 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41079| Best HMM Match : zf-DHHC (HMM E-Value=9.3)                   28   1.7  
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.7  
SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)                 27   3.0  
SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3)               27   4.0  
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)              26   7.0  
SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_41079| Best HMM Match : zf-DHHC (HMM E-Value=9.3)
          Length = 138

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 302 DRLLRHPAAV*IHSHNHRTWVYYPLPVPVSVQLTPLVAR 186
           D  L +P     HSHNHR ++ +  PV +S    P +A+
Sbjct: 66  DTTLFYPLKSWYHSHNHRNFIVFSAPV-ISGTPAPDIAK 103


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -2

Query: 66 TTIVPRAEFLQPGDPL 19
          +T V R EFLQPGDPL
Sbjct: 26 STRVDRIEFLQPGDPL 41


>SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)
          Length = 1169

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 269 IHSHNHRTWVYYPLPVPVSVQLTPLVARALRPSVRSKEASGRPGGCCR 126
           I    +  W Y    VP ++Q   L+ RA+   + +   +G  G CC+
Sbjct: 716 IRGATNELWKYDIGRVPFAIQAAQLLGRAIGAGLFAITPAGERGMCCK 763


>SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3)
          Length = 425

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +2

Query: 239 RPKCGDYVSEFT--LQPGDVGD 298
           +P CGDY+ + T  L+PGD  D
Sbjct: 393 KPPCGDYLGDLTSKLEPGDFID 414


>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
          Length = 1099

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 257 NHRTWVYYPLPVPVSVQL 204
           +H TWV +P+ VPVS  +
Sbjct: 371 SHDTWVTHPVAVPVSTHI 388


>SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -3

Query: 56  CLVPNSCSPG--IHYSRAPP 3
           CL+ NSCSPG  +   R PP
Sbjct: 69  CLISNSCSPGDPLVLERPPP 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,474,346
Number of Sequences: 59808
Number of extensions: 201513
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)