Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0025
(563 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 165 2e-41
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 62 3e-10
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 59 2e-09
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 59 2e-09
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 54 1e-07
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 46 3e-05
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 46 3e-05
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 45 5e-05
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 44 9e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 44 9e-05
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 43 2e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 42 3e-04
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 41 8e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 40 0.001
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 40 0.001
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 39 0.002
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 39 0.002
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 36 0.017
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 36 0.023
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 35 0.040
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 34 0.070
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.092
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 33 0.12
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 33 0.16
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 33 0.21
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 32 0.37
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 31 0.49
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 31 0.86
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 31 0.86
SB_59647| Best HMM Match : Ank (HMM E-Value=0.00054) 29 2.0
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 29 2.6
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.6
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 29 2.6
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 29 3.5
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 29 3.5
SB_48933| Best HMM Match : Drf_FH1 (HMM E-Value=1.4) 28 4.6
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1) 28 4.6
SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 28 4.6
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 6.1
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 28 6.1
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 27 8.0
SB_43344| Best HMM Match : Pkinase (HMM E-Value=6.9e-08) 27 8.0
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 165 bits (402), Expect = 2e-41
Identities = 89/153 (58%), Positives = 107/153 (69%), Gaps = 4/153 (2%)
Frame = +3
Query: 21 EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVC 197
E+ + ER+ R+QGVNLY+KNLDD IDDERLR+EF+P+GTI+SAKVM +D G SKGFGFVC
Sbjct: 199 EKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVC 258
Query: 198 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTXXXXXXXXXXXXXXXXXIFQ 377
FSSPEEATKAVTEMNGRI+ +KPLYVALAQR+E+RKA L +
Sbjct: 259 FSSPEEATKAVTEMNGRILISKPLYVALAQRREERKAQLA--------AQHMHRISGLRM 310
Query: 378 PSGASGFFVPSLPPA-PRYYGP--AQMTQIRPT 467
G FF P +P PR+ P Q Q+RPT
Sbjct: 311 HQGQRPFFTPQMPQVRPRWGMPPQQQQQQMRPT 343
Score = 82.6 bits (195), Expect = 2e-16
Identities = 41/105 (39%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Frame = +3
Query: 3 RRSSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSK 179
R S +E+++ + N+YVKN D +DDE++++ A G I S KVM + +G+SK
Sbjct: 90 RWMSKKERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSK 149
Query: 180 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 314
GFGFV F +PEEA +AV +NG+ +G + L+ A+++ +R A +
Sbjct: 150 GFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEV 194
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 62.1 bits (144), Expect = 3e-10
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKA 227
G NL++ NLD +D++ L F+ FG I ++ D G SKGF F+ F+S + + A
Sbjct: 99 GANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAA 158
Query: 228 VTEMNGRIVGTKPLYVALAQRKEDR 302
+ MNG+ + +P+ V+ A +KE +
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKESK 183
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 48 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEAT 221
R Q +YV LD+ + + + + F G + + + + +G+GFV F E+A
Sbjct: 9 RNQDATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDAD 68
Query: 222 KAVTEMNGRIVGTKPLYV 275
A+ MN V KP+ V
Sbjct: 69 YAIKVMNMIKVYGKPIRV 86
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 230
G NL++ +L D L + F PFGT+ SAKV + + SK FGFV + + A A+
Sbjct: 276 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAI 335
Query: 231 TEMNGRIVGTKPLYVALAQRKEDRKAH 311
MNG +G K L V L + K+ + +
Sbjct: 336 QHMNGFQIGAKRLKVQLKRPKDANRPY 362
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Frame = +3
Query: 30 KSERLTRYQG-VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCF 200
++ERL + G LYV +L I + ++ F PFGT+ S +++ E RSKG+GFV F
Sbjct: 231 EAERLKQPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQF 290
Query: 201 SSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 311
E A +A+ +MNG + +PL + + D A+
Sbjct: 291 REAEAAKRAMEQMNGFELAGRPLKIGPVTERGDSSAY 327
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +3
Query: 36 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 209
E T + NL + + ++ E ++K F G +TS K++ + G+S G+ FV + +P
Sbjct: 19 ENGTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNP 78
Query: 210 EEATKAVTEMNGRIVGTKPLYVALAQ 287
++A KAV EMNG + K L V+ A+
Sbjct: 79 DDANKAVREMNGARLQNKTLKVSFAR 104
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +3
Query: 45 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEAT 221
T + NLY+ L + +E + F PFG I ++KV+ + G +G GFV F EA
Sbjct: 108 TEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQ 167
Query: 222 KAVTEMNGR 248
A+ ++N +
Sbjct: 168 TAIDDLNNK 176
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 233
QG ++V L L K F+P+G IT+ ++ L+ KG+GFV S+ EEA A+
Sbjct: 270 QGWCIFVYGLPQEATPLFLYKLFSPYGAITNIELKLD----KGYGFVNMSNYEEACHAIC 325
Query: 234 EMNG 245
+NG
Sbjct: 326 CLNG 329
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 242
Y+ NL ++D++ L ++F + KV+ E GR +GFGFV F S EE KA+ E +
Sbjct: 8 YIGNLSYSVDEQALEEKFHGCDVV-DVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFD 66
Query: 243 GRIVGTKPLYVALAQRKEDRKA 308
G+ +P+ V AQ + +R A
Sbjct: 67 GQDFDGRPMKVNQAQPRGERGA 88
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKA 227
+G LY+ NL+ D+ + + F FG + ++ E GRS+GFGFV S ++ A
Sbjct: 7 RGRKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPA 65
Query: 228 VTEMNGRIVGTKPLYVALAQRKEDRK 305
+ +MN VG + + VALA K + +
Sbjct: 66 IEKMNQSSVGGRNITVALALDKTENR 91
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +3
Query: 105 RLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 278
RL + F PFGT+ SAKV ++ SK FGFV + + A A+ MNG +G K L V
Sbjct: 277 RLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQ 336
Query: 279 LAQRKEDRKAH 311
L + K+ + +
Sbjct: 337 LKRPKDANRPY 347
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVC 197
G NL++ +L D L + F PFGT+ SAKV + + SK FG C
Sbjct: 228 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGECC 276
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Frame = +3
Query: 60 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 239
+++++ NL D+E L F G + +V+ ++GRS+GFG+ F+S E+ KA+ E+
Sbjct: 180 MSVFLGNLSFDADEETLAAFFEEKGLSATCRVITQEGRSRGFGYADFTSKEDYNKAL-EL 238
Query: 240 NGRIVGTKPLYVALAQRKEDR 302
NG + + + A K R
Sbjct: 239 NGEDCCGREIRINPANSKPSR 259
Score = 36.7 bits (81), Expect = 0.013
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +3
Query: 63 NLYVKNLD-DTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT 233
+L V+NL DT D A F ++AKV+ E G S+GFGFV + E A K ++
Sbjct: 290 SLIVRNLSYDTTTDSL----GAAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVLS 345
Query: 234 EMNGRIVGTKPLYVALAQRKED 299
EM G V + + + A + +
Sbjct: 346 EMAGAEVDGRQVRLDFASPRTE 367
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
L V + + D+ R F ++ + K++ G S GFGFV +++ E+A KA+ ++
Sbjct: 49 LIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKL 108
Query: 240 NGRIVGTKPLYVALAQ 287
NG +G K L VA ++
Sbjct: 109 NGFTIGNKVLKVAFSR 124
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 227
+G NLYV N+ + + RK F +G I + +++ + G KG GFV + EA A
Sbjct: 131 KGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAA 190
Query: 228 VTEMNG 245
++ ++G
Sbjct: 191 ISSLSG 196
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 57 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAV 230
G LYV N+ + E + F G + +M + R KGF FV ++ EEA A+
Sbjct: 274 GCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAI 333
Query: 231 TEMNGRIVGTKPL 269
+NG + KPL
Sbjct: 334 QTLNGFMYTNKPL 346
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMN 242
YV L + +D++ L F PFG IT ++ ++ SK GFGFV F E+ A+ MN
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 243 GRIVGTKPLYVALAQ 287
+ + + V LA+
Sbjct: 68 ESELFGRTIRVNLAK 82
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
++ +L + DE L + FA + + AK++ + +SKG+GFV F P + KA+ EM
Sbjct: 219 IFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREM 278
Query: 240 N 242
N
Sbjct: 279 N 279
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 239
NLY++NL D+ L F+ +G + S +++ + D SKG GF S E+ + + +
Sbjct: 180 NLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDF 239
Query: 240 NGRIV 254
N +++
Sbjct: 240 NKKML 244
Score = 44.4 bits (100), Expect = 7e-05
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +3
Query: 3 RRSSTR-EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS- 176
R SS R + L + NLY++ L D+ L + +GTI S K +L+ +
Sbjct: 80 RSSSDRMDSLPDTGEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNL 139
Query: 177 -KGFGFVCFSSPEEATKAVTEM 239
KG+GFV F SP A KAV +
Sbjct: 140 CKGYGFVDFESPISAQKAVAAL 161
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
+++ L+ +E L+ F+ +GTI +M DGRS+GFGFV + S + + +
Sbjct: 52 IFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGFVTYESSDSVNEVL 106
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
+YV +++ + +E +R F PFG I + + + + KGF FV + PE A A+ +M
Sbjct: 104 VYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQM 163
Query: 240 NGRIVGTKPLYV 275
NG ++G + + V
Sbjct: 164 NGVLLGGRNIKV 175
Score = 34.7 bits (76), Expect = 0.053
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
+Y+ ++ + ++ ++ F FG + + E G+ KG+GF+ + + + A A+ M
Sbjct: 201 IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASM 260
Query: 240 N 242
N
Sbjct: 261 N 261
Score = 31.1 bits (67), Expect = 0.65
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Frame = +3
Query: 72 VKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFG-----FVCFSSPEEATKAVT 233
V++LD+ ++ E + E + FGT++ + E G + FV F+SP+E KA +
Sbjct: 506 VEDLDEDLEHE-VTDECSKFGTVSRVVIYKEKQGEEEDAEVIVKIFVEFTSPDETDKATS 564
Query: 234 EMNGRIVG 257
++GR G
Sbjct: 565 NLDGRWFG 572
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKE----FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 233
+Y+KNL++ I E L+K F+ FG I V L+ + +G FV F AT A+
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDI-VALKTLKMRGQAFVVFKDIGSATNALR 67
Query: 234 EMNGRIVGTKPLYVALAQRKEDRKA 308
M G KP+ + A+ K D A
Sbjct: 68 SMQGFPFYDKPMRIQYAKGKSDAVA 92
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 162 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 299
E GR +GFGFV F S EE KA+ E +G+ + +P+ V A+ + D
Sbjct: 132 ETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGD 177
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 138 ITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 302
+ S KV+ E GR +GFGFV F S +E KA+ + +G + +P+ V AQ + +R
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGER 91
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED----GRSKGFGFVCFSSPEEATKAVT 233
L ++NL + L++ F+ FG ++ A V + R GFGFV F++ +A KA+
Sbjct: 249 LIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALE 308
Query: 234 EMNGRIVGTKPLYVALAQRK 293
EMN + + +P+ V A K
Sbjct: 309 EMNAKKILGRPVAVDWAVPK 328
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE---DGRSKGFGFVCFSSPEEATKAVTE 236
++V+NL I D + F G + ++ + R +GFG+V F+ E+A KA +
Sbjct: 22 IFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKA--K 79
Query: 237 MNGRIVGTKPLYVALAQRKEDRK 305
N + + +P+++ +++K K
Sbjct: 80 DNIKSIKGRPIHLDFSEKKARTK 102
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 162 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 278
++ RS+GFGFV F++PE+A AV +NG+ V + L +A
Sbjct: 94 QEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIA 132
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 6 RSSTREQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSK 179
RS +R + +R + LYV +L ++ + +++ F+ +G + + + + + S+
Sbjct: 1139 RSRSRSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSR 1198
Query: 180 GFGFVCFSSPEEATKAVTEMNG 245
GF +V + PEE KA+ M+G
Sbjct: 1199 GFAYVEYVDPEECEKALKHMDG 1220
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 236
+++V N+ +E+L++ F+ G + S +++ E G+ KG+GF + E A A+
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 237 MNGRIVGTKPLYVALAQRKEDRK 305
+NG + + L V A +++++
Sbjct: 86 LNGYELNGRALRVDSAASEKNKE 108
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV 230
+Y+++ I L F P+G I ++ + G+SKGFG+V + + E A +A+
Sbjct: 65 IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGYVTYENAESAQRAL 120
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 171 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 299
+SKGFGFV F E+A KA+ EM+ +G K + A RK +
Sbjct: 552 KSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
Score = 29.9 bits (64), Expect = 1.5
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +3
Query: 18 REQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG-FGFV 194
R L++ + +LYV NLD E + F + K M+ KG + FV
Sbjct: 355 RISLRARYFPEEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCK-MINSPTDKGPYCFV 413
Query: 195 CFSSPEEATKAVTEMNGRIVGTKPLYV 275
F + +A +A M+ R V K L V
Sbjct: 414 EFETHADAQEAKFRMDQRTVMDKKLKV 440
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITS 146
+++V +L + +D+ LRK F PFG I++
Sbjct: 459 HIFVGDLAENVDNALLRKTFEPFGEISA 486
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +3
Query: 39 RLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFS 203
++T+ +GV+ L V L + +++ F FG I +V L+ RS+GFGFV F
Sbjct: 105 KITKVEGVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFK 164
Query: 204 SPEEATKAVTEMNGRIVGTKPLYVALAQRKED 299
E+A K V + RI G + V L + KE+
Sbjct: 165 KDEDA-KNVLSTSHRIQG-RLCEVRLPRPKEE 194
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
++++ NL I++E LR+ F G + S +++ + G KGFG+V F S + A+
Sbjct: 57 SVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKM 116
Query: 237 MNGRIVGTK 263
N G K
Sbjct: 117 NNAEFKGRK 125
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 39.1 bits (87), Expect = 0.002
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK-----------------GFGFV 194
L+V N+ D LR+ F FG I +++ + SK GFGFV
Sbjct: 70 LHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFGFV 129
Query: 195 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 293
F++ EA KA ++NG IV + + V+L +
Sbjct: 130 TFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQ 162
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 38.7 bits (86), Expect = 0.003
Identities = 29/87 (33%), Positives = 48/87 (55%)
Frame = +3
Query: 33 SERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPE 212
+++L G ++V + T +E L++EF G + +V E RS+GF V F + E
Sbjct: 101 AKKLIASGGKTVFVSGIGLT--EEILKEEFNHLGHVE--RVNFEKNRSQGF--VTFDTWE 154
Query: 213 EATKAVTEMNGRIVGTKPLYVALAQRK 293
A KA+ EMNG V + V++A+R+
Sbjct: 155 AADKAIDEMNGLKVQHVHIRVSMARRQ 181
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 38.3 bits (85), Expect = 0.004
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKE-FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 236
L+V L + L KE F+ G +T A+V + +G S+GF FV +++ EEA K
Sbjct: 207 LFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRA 266
Query: 237 MNGRIVGTKPLYVA 278
NGR V + VA
Sbjct: 267 HNGRQVEGSNIRVA 280
Score = 32.3 bits (70), Expect = 0.28
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
L+V NL + + +P+G I ++ + G SKG+GFV +++ E A +A ++
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQL 174
Query: 240 ---NGRIVGTKPLYVALAQ 287
+ +G + L VA A+
Sbjct: 175 LNTASKYIGGRILRVAFAE 193
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
+Y+ N+ D + +EF FG + V GF F F +A AV E++G
Sbjct: 4 VYIGNIGDNASKREIEREFETFGPLRDVWVARNP---PGFAFCVFEDRRDAEDAVRELDG 60
Query: 246 RIVGTKPLYVALAQ 287
R + + V LA+
Sbjct: 61 RYICGQRARVELAK 74
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/80 (26%), Positives = 41/80 (51%)
Frame = +3
Query: 63 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 242
++YV+N+ + + +L+ F +G I + + + +GFV F+ E A +A+ +N
Sbjct: 3 SIYVRNVPLPMSETQLKAVFTKYGQIEKVR------KIRDYGFVYFAKRESAVQAIDGIN 56
Query: 243 GRIVGTKPLYVALAQRKEDR 302
G + L V+LA + R
Sbjct: 57 GAYIDGCKLEVSLAIPQSSR 76
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 35.9 bits (79), Expect = 0.023
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 239
L+V + D+ LRK FA FG I A V+ + +SKG+GFV ++ + A A
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNK 71
Query: 240 NGRIVG 257
I G
Sbjct: 72 RPMIEG 77
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 35.9 bits (79), Expect = 0.023
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +3
Query: 42 LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEAT 221
L R + +Y+ +L D + EF +G + V GF F F +A
Sbjct: 26 LRRAEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNP---PGFAFCIFDDRRDAE 82
Query: 222 KAVTEMNGRIVGTKPLYVALAQ 287
AV E++GR + + + V LA+
Sbjct: 83 DAVRELDGRYICGQRVRVELAK 104
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 242
L+V NL+ I + LR F FG + + G+ + FV F+ + A KA M
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAMQ 298
Query: 243 GRIVGTKPLYVALAQRKE 296
G+ +G + + + ++
Sbjct: 299 GQCIGRNHIKIGYGRSQQ 316
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 35.5 bits (78), Expect = 0.030
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
++V NLD I E L F+ G I ++ +DG+ + ++ F+ + A+ + +G
Sbjct: 74 VFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFAETQAIVSAL-QYSG 132
Query: 246 RIVGTKPLYVALAQRK 293
I G KP+ ++R+
Sbjct: 133 AIFGGKPIKSRSSRRR 148
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +3
Query: 21 EQLKSERLT-RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGF 191
+QLK + + +++ + V NL + + L++ F P G I+ + + +SKGF F
Sbjct: 167 QQLKEDDGSGQHETATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAF 226
Query: 192 VCFSSPEEATKAVTEMNG 245
+ F E+A +A+ ++G
Sbjct: 227 INFVHREDAARAIEVLSG 244
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 34.3 bits (75), Expect = 0.070
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 180 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 299
G GFV F PE A KA E++G + + L++ A+ K++
Sbjct: 283 GIGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPAKAKKE 322
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 155
+GV L+VKNL +E L+++FA G + SA +
Sbjct: 532 EGVTLFVKNLSFESTEEALKQKFAAVGPVKSATI 565
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 99 DERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 230
D+ + + F+P + VM + G+ G FV FSS + KA+
Sbjct: 181 DKHILEFFSPLKPVAIRFVMNKKGQPSGCAFVDFSSKSDLEKAL 224
>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 33.9 bits (74), Expect = 0.092
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 156 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 269
++++GR KG FV S E+A +A+ E++G ++ KP+
Sbjct: 285 LMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPI 322
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = +3
Query: 3 RRSSTREQLKSERLTRYQG--VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS 176
R + T L S + R +YV NL + ++ L F +G I + G
Sbjct: 240 RLTETTLSLMSSNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAG 299
Query: 177 KGFGFVCFSSPEEATKAVTEMNG 245
F FV F P +A AV +G
Sbjct: 300 PPFAFVEFEDPRDAEDAVKGRDG 322
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 69 YVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
Y+ NL ++D++ L ++F + + E GR +GFGFV + + K + +
Sbjct: 85 YIGNLSYSVDEQALEEKFHDCNVVDVRVITDRETGRPRGFGFVTLEAKKTRIKPLKNLTD 144
Query: 246 R 248
R
Sbjct: 145 R 145
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 242
L+V NL + + + F+ G + +++ G+ KG+G+V + A+ AV ++
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 243 GRIVGTKPLYVALA 284
V + + VAL+
Sbjct: 233 KTEVKGRTISVALS 246
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 54 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 227
+G L+V N+ + ++ + + F+ +G I + V L+ G KG+ V + + +EA A
Sbjct: 291 EGWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSA 350
Query: 228 VTEMNG 245
+ +NG
Sbjct: 351 LEALNG 356
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +3
Query: 102 ERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEA----TKAVTEMNGR--IVG 257
E LR+ F FG + VM + RS+GFGF+ F P+ E++G+ +
Sbjct: 122 EGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKMVTT 181
Query: 258 TKPLYV 275
TK +++
Sbjct: 182 TKKIFI 187
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 31.9 bits (69), Expect = 0.37
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 87 DTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGR 248
D +DE L F G I ++M++ G +KGF F FS+ +EA AV +++ +
Sbjct: 162 DCFEDE-LIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKKLDNK 216
>SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 93 IDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEATKAVTEMNGR 248
+++E L + F +G + S K+M E R++ GFV + ++ KA+ + G+
Sbjct: 217 MNEEMLMRLFGKYGPLASVKIMWPRTEEEKSRNRNCGFVAYMRRKDGDKAIKHLTGK 273
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 245
+Y+ L ++ ++K F +G +++L+DG +GFV F ++A AV E NG
Sbjct: 5 VYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDG----YGFVEFDYSDDAEDAVYECNG 60
Query: 246 R 248
+
Sbjct: 61 K 61
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 242
+++ L + + + L + F FG + ++ E G+S+ GFV F S + A A MN
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMN 585
Query: 243 G 245
G
Sbjct: 586 G 586
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 171 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 296
R +GFGFV F S A KA + ++ K + V AQ KE
Sbjct: 10 RHRGFGFVTFESENSADKA-CDTQYHLINNKKVEVKKAQPKE 50
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 183 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 299
FGFV F + + A +AV + +GRI+ K + V + + D
Sbjct: 82 FGFVQFETEKGADEAVAKEHGRIINGKKIDVRIVNSRAD 120
>SB_59647| Best HMM Match : Ank (HMM E-Value=0.00054)
Length = 305
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 277 ATYNGLVPTIRPFISVTALVASSGEEKQTNPKPLLRPSSSITFADVIVPNGAN 119
A YNG +P ++ I + S +EK + P + + +V NGAN
Sbjct: 30 AAYNGDLPQLKMLIETGVVSISERDEKGSTPAHKAAGNGHVQVLQWLVENGAN 82
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 378 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPS 506
P F+PS PP P + PA PT P + PP P+
Sbjct: 297 PPAPPNLFIPSAPPNP-HIPPAPPNPYIPTAPPNPSIPPAPPN 338
>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 864
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 470 SCRSYLSHLSWSIVTWCWRERWYKKSTCTTRLEY 369
S + L ++SI W W R+Y ST T R+ Y
Sbjct: 787 SAATSLDTKTFSIEYWRWHHRFYSGSTATIRIFY 820
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +3
Query: 66 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 239
+++ L + ++++++++ + FG + + ++ + G SKG+ F + A+ +
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734
Query: 240 NGRIVGTKPLYVALA 284
NG +G K L V A
Sbjct: 735 NGMQLGDKKLIVQRA 749
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 378 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPV 497
P+G +P +PP P Y P P P+++ +PPV
Sbjct: 376 PTGVPPQMLPMMPPRPTVYHPPADDTYNPEQPQFD-RPPV 414
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 84 DDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNG 245
D+ +D+ L++ +A +++ G ++GFGFV F +PE A + + + G
Sbjct: 340 DEISEDDVLQELYAAEVAFRDVRIVRNKIGYTRGFGFVEFDTPEAAKEWMDYLKG 394
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 159 LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 263
L+ GRSK +GFV F E KA+ I G K
Sbjct: 97 LKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQK 131
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 129 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 275
+G I + ++ + G+ KGF F+C+ AV NG +G + + V
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRV 52
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 411 LPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASGHIANFMQPT 551
LP P P T I P++ + N+ PP PSTQ S + + P+
Sbjct: 248 LPSTP---APINPTPINPSSYQPNSHPPQLPSTQLPSTQLPSTQLPS 291
>SB_48933| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)
Length = 611
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 402 VPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASGHIANFMQP 548
+PS+ P P P Q I+P TP+ P + P + A+ +QP
Sbjct: 89 IPSMVPVPEIATPQQPETIQPETPK--DIPSMAPVPEIATSQQPETIQP 135
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 162 EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 251
E+G++ G GFV F+SPE A +A+ + +I
Sbjct: 74 EEGKTTGEGFVEFASPEIAGQAMQKHKEKI 103
>SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)
Length = 762
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 232 VTALVASSGEEKQTNPKPLLRPSSSITFADVI 137
++ + +S KQT PK L+RP S D I
Sbjct: 651 ISGIPSSRSSRKQTEPKKLVRPESEYELEDEI 682
>SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1184
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 417 PAPR-YYGPAQM--TQIRPTTPRWNAQPPVRPSTQAASG 524
P P+ YYG Q+ + +P P + QPP RP + A SG
Sbjct: 409 PVPKGYYGSPQIISSNFQPP-PAYAPQPPTRPLSGATSG 446
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 189 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 305
+V F E+A KAV ++N R +P+Y L+ + R+
Sbjct: 116 YVKFRYEEDAEKAVNDLNNRWYNGQPIYAELSPVTDFRR 154
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 414 PPAPRYYGPAQMTQIRPTTP----RWNAQPPVRPSTQAASGHIANFM 542
PP PR P + R ++P ++PP +P+ A G +AN +
Sbjct: 695 PPPPRPMAPKDASLHRASSPPGFTHKGSEPPPKPAPPARPGSVANVL 741
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 177 KGFGFVCFSSPEEATKAVTEMNGR-IVGTK 263
+G+GFV F +A AV ++NGR ++G +
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGER 751
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 401 CTIAPSSTTLLWTSSNDSNKTYNSKVE 481
CT+ ST L W++ D + YN +E
Sbjct: 836 CTVKECSTDLSWSTMTDMERVYNEFLE 862
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 45 TRYQGVNLYVKNLD-DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEE 215
T G +++ + D ++DE L G I ++ ++ G +KGF F F+
Sbjct: 148 TEESGTEVFIGKIPRDCLEDE-LIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTS 206
Query: 216 ATKAVTEMNGR 248
A +A+T +N +
Sbjct: 207 AYQAITTLNDK 217
>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1029
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 221 GSFFRRRKTDKPEAFTTSIF*HYLRRRNSP 132
G F +RRKT KP + +F + ++ N P
Sbjct: 969 GRFLKRRKTQKPGMSPSKLFGCFFKKLNCP 998
>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 387 ASGFFVPSLPPAPRYYGPAQMTQIRPTT--PRWNAQPPVRPSTQA 515
A FVP LPP+P + RP T P + PP PS A
Sbjct: 195 APNHFVPLLPPSPEPVPTPKAPASRPGTKRPASPSTPPKMPSKTA 239
>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
Length = 618
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 387 ASGFFVPSLPPAPRYYGPAQMTQIRPTT--PRWNAQPPVRPSTQA 515
A FVP LPP+P + RP T P + PP PS A
Sbjct: 19 APNHFVPLLPPSPEPVPTPKAPASRPGTKRPASPSTPPKMPSKTA 63
>SB_43344| Best HMM Match : Pkinase (HMM E-Value=6.9e-08)
Length = 424
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 232 VTALVASSGEEKQTNPKPLLRPSSSIT 152
+TA + G K+T +P+ RP SIT
Sbjct: 388 ITASIPKLGSHKETRTRPVQRPIQSIT 414
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 503 RPYRGLCIPPWSCRS 459
R RGLC+PPW R+
Sbjct: 475 RSIRGLCLPPWCSRA 489
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,630,268
Number of Sequences: 59808
Number of extensions: 372132
Number of successful extensions: 1202
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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