Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0018
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)             184   7e-47
SB_57870| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18)                   30   2.5  
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)           29   4.3  
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)                   29   5.7  
SB_43707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               28   10.0 

>SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score =  184 bits (448), Expect = 7e-47
 Identities = 86/114 (75%), Positives = 96/114 (84%)
 Frame = +2

Query: 449 MFDEKEGVIPGNALVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSG 628
           M  + + VIPGNAL+VDP KQFR LS FGNAFLNRF CS + +DVL  I+IVDTPGILSG
Sbjct: 1   MHGDSQQVIPGNALIVDPNKQFRSLSSFGNAFLNRFCCSELPNDVLNSITIVDTPGILSG 60

Query: 629 EKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFRRSIEALRGHDDKI 790
           EKQ V RGYDFTG+L+WFAER DRIILLFDAHKLDISDEF+R IE LR +DDKI
Sbjct: 61  EKQSVARGYDFTGILKWFAERCDRIILLFDAHKLDISDEFQRGIEVLRDYDDKI 114


>SB_57870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
 Frame = +2

Query: 407 RIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKF-GNAFLNRFQCSTVTSDV 583
           R G    T  F  V   +K   + GNA  +     F+PL +  G       + ST     
Sbjct: 13  RTGVAIETQGFTFVTSGKKRESLTGNA-TLHLYSHFKPLQEIEGVVEYLTTEISTSKQKK 71

Query: 584 LRGISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFD 718
              ++ +DTPG++ G+   +   +D    + W     D I + FD
Sbjct: 72  FPLVTFIDTPGLVDGD---MKYPFDVDEAIIWLGGLADLIFVFFD 113


>SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18)
          Length = 323

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
 Frame = -1

Query: 687 SANHSNTPVKSYPRSTRCFSPDRIPGVSTIEIP------RSTSDVTVEHWNRFRKALPNL 526
           SA HS+  + +   S    +   +PG S + IP       S+  ++  H      A  +L
Sbjct: 130 SATHSSPGISATHSSPGISATHSLPGKSRLHIPTRYKSTHSSPGISATHSLPGISATHSL 189

Query: 525 LNGRNCFFGSTTNALPGITPSFS-SNITAINLSVVGSGPIRMPGKSLSRQIP 373
               +  + S T++LPGI+ + S   I+A +     S    +PG S +  +P
Sbjct: 190 SATHSLPYRSATHSLPGISATHSLPGISATHSLPGRSATHSLPGISATHSLP 241


>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
          Length = 2146

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 177 CRGTGSQRNFTKLKLFAPLDAAXYQYPRIXPFADSFE 287
           C+GTG  +N    KLF P+     + P   P A  F+
Sbjct: 318 CKGTGVDKNTGWFKLFVPVGKPNDRKPTFNPLAFMFD 354


>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
          Length = 365

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 593 ISIVDTPGILSGEKQRVDRGYDFTGVLEWFAERVDRIILLFDAHKLDI 736
           I ++D PGI+ G  Q   RG     V    A   D ++++ DA K +I
Sbjct: 112 IQLLDLPGIIEGAAQGKGRGRQVIAV----ARTADLVLMMLDASKGEI 155


>SB_43707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 11 LSLCGFVINLIQKWCSECISASCLFS 88
          L +CG V   +Q WC  C  + CLF+
Sbjct: 19 LPICGDVFLAVQGWCGAC--SGCLFT 42


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 480 PGITPSFSSNITAINLSVVGSGP-IRMPGKSLSRQIPE*MSVLP 352
           P ITP+ + N+  INL    SGP I  P  S    +   M  LP
Sbjct: 530 PAITPTHADNLLTINLPSAKSGPEITSPQASSILTVTSTMPRLP 573


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,454,553
Number of Sequences: 59808
Number of extensions: 476912
Number of successful extensions: 1222
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)