Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0017
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)                   31   0.51 
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)       29   2.1  
SB_10651| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)       29   2.1  
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   27   8.3  
SB_47150| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-15)                 27   8.3  
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
 Frame = +1

Query: 184 VEFVIPPLI--DGEVLVKAEWISVDPYLRA-YNSYQAVPY-DQFSY-------QVGVVVQ 330
           VE V PPL+   GE+LVK  ++SVDPY+R+  N   +V Y   F          VG V +
Sbjct: 28  VEPVEPPLVCEQGEILVKTLYLSVDPYMRSRMNEGGSVGYIAPFEIGKVLSGGGVGRVEE 87

Query: 331 SRDSNYPVGTRVVAHKGWCDHYVFTPSTQPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGA 510
           S+   + VG  V        HY   P    +  K       ++   +PSL +G  G+   
Sbjct: 88  SKSDKFSVGDIVECFGFPWQHYCVLPEDHQSLRKVE----SEIVCENPSLALGLCGLTAL 143

Query: 511 TAYFGFLE--ICKPKAGETVVVT 573
           T+     E     P   +TVVVT
Sbjct: 144 TSLIALQERGHIVPGQNQTVVVT 166


>SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)
          Length = 755

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 52  AQSLSGSACDKKTQGPTKVEMTSARKYVVKNHFKGV 159
           A  L G   D   +G  K    S+R + +KN+FKG+
Sbjct: 690 ALELEGKEADSDDEGSLKDNRRSSRSFSIKNYFKGI 725


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 70  SACDKKTQGPTKVEMTSARKYVVKNHFKGVSKQEDYELV-EFVIPPLIDGEVLVKA-EWI 243
           S+C+  T+  TKV ++S    + KN F   +     E V    IPP+    V V+   W 
Sbjct: 397 SSCNDTTRSETKVLVSSLESTLTKNTFSKPAPSSSKEYVPSLQIPPVQANTVEVRVYPWH 456

Query: 244 SVDPYL 261
           ++ P+L
Sbjct: 457 TLLPHL 462


>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -1

Query: 575  PVTTTVSPAFGLQISKKPK*AVAPGIPTAPTPSDGDNPCRSGSL*IRSFGVLGCVLGVKT 396
            PV    S   GL+         + G+P+A TP+ G N   S S  I   G+L   +G+ T
Sbjct: 835  PVAPGPSEPQGLRADDAASGTASAGMPSAHTPAPGSNSAWSASSVIELAGLLVSSIGLYT 894


>SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
          Length = 187

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 394 SGRTIL--CAQQLSFLPDSCYPLIGQQHRLDN*TGRRV 287
           SG++ L  C    SF+P  CYP IG    +D  TG+ +
Sbjct: 134 SGQSYLPKCQSDGSFVPMQCYPAIGYCWCVDEQTGKHI 171


>SB_10651| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
          Length = 74

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 394 SGRTIL--CAQQLSFLPDSCYPLIGQQHRLDN*TGRRV 287
           SG++ L  C    SF+P  CYP IG    +D  TG+ +
Sbjct: 21  SGQSYLPKCQSDGSFVPMQCYPAIGYCWCVDEQTGKHI 58


>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 394 SGRTIL--CAQQLSFLPDSCYPLIGQQHRLDN*TGRRV 287
           SG++ L  C    SF+P  CYP IG    +D  TG+ +
Sbjct: 271 SGQSYLPKCQSDGSFVPMQCYPAIGYCWCVDEQTGKHI 308


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 221 SSLKPNGSASTRI*GLTTLTKLYPTTSSVIKSVLLSNQGIATIR*ERELLRTKDGATTTS 400
           SS+  N + ST    + T + + PTT+SV+ S + S+    +      L  +     TTS
Sbjct: 501 SSMTTNSTTSTLAEAVATSSPVLPTTTSVLTSSMESSMATTSTTSTPSLESSMTTNNTTS 560

Query: 401 SL 406
           +L
Sbjct: 561 TL 562


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 427 PKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPKAGETVVV 570
           PK++++ LP     + + G+  V +   TA++ F E+   + G  V+V
Sbjct: 114 PKNQLFALPKKMSKNEAAGLPTVAL---TAWYAFFELAHTRPGAWVLV 158


>SB_47150| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-15)
          Length = 382

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 284 LYPTTSSVIKSVLLSNQGIATIR*ERELLRTKDGATT 394
           ++ T S ++ ++++    I TIR  R L  T+DG TT
Sbjct: 202 IFITFSFILPAIVIGFTTIRTIRTIRRLATTRDGGTT 238


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -2

Query: 49 RAEFLQPGDPLV 14
          R EFLQPGDPLV
Sbjct: 31 RIEFLQPGDPLV 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,628,219
Number of Sequences: 59808
Number of extensions: 407700
Number of successful extensions: 1113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)