Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0014
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                33   0.17 
SB_47754| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_40739| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-28)                 28   6.3  
SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                28   6.3  

>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 229  PTNFCYIFKLNCISYYRKKWTRHLNNYLFNFFQHRNVIIIMYRL 98
            P N  YI     I  ++    R L+++L NF+   NVI I YRL
Sbjct: 1566 PPNTAYIHHYTNIGCFQDNGRRALSHHLGNFYGKSNVIAICYRL 1609


>SB_47754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 229 PTNFCYIFKLNCISYYRKKWTRHLNNYLFNFFQHRNVIIIMYRL 98
           P N  YI     I  ++    R L+++L NF+   NVI I YRL
Sbjct: 2   PPNTAYIHHYTNIGCFQDNGRRALSHHLGNFYGKSNVIAICYRL 45


>SB_40739| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-28)
          Length = 327

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 235 NVPTNFCYIFKLNCISYYRKKWTRHLNNYLFNFF 134
           N PT F Y F  NC S     WT  +  +  N F
Sbjct: 82  NFPTMFVYAFTFNCFS-QPSSWTWPILGFCMNVF 114


>SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 349

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 565 SSQSATRFSSYSGASVKTTVDLYISIGNSNFNNH 464
           ++ + T  ++ +  ++ TT  +YI+IG +N NNH
Sbjct: 104 TTATVTSAAATAITTIATTTTMYINIGINNSNNH 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,275
Number of Sequences: 59808
Number of extensions: 241342
Number of successful extensions: 344
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)