Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0088
(518 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16806| Best HMM Match : CUE (HMM E-Value=1e-07) 60 1e-09
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07) 31 0.43
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_25668| Best HMM Match : Sigma70_r1_1 (HMM E-Value=1.2) 29 2.3
SB_7094| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_20713| Best HMM Match : Pkinase (HMM E-Value=0) 29 2.3
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_39491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_26154| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_58313| Best HMM Match : UPF0180 (HMM E-Value=3.4) 27 7.0
SB_42367| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33) 27 7.0
SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_38230| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_16806| Best HMM Match : CUE (HMM E-Value=1e-07)
Length = 322
Score = 59.7 bits (138), Expect = 1e-09
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +3
Query: 294 MDEVMLWCSWFTLVGFLHLMGQLCKDRFEYLASS 395
M+EVM W +WFTL+GF HL QLCKDRFEYL S+
Sbjct: 1 MNEVMWWTAWFTLLGFFHLFAQLCKDRFEYLWSN 34
>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
Length = 653
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR G+LLG++ A LLGV AWG+ G
Sbjct: 474 VRAWGVLLGVVRAWRVLLGVVRAWGVLLG 502
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR G+LLG++ A LLGV AWG+ G
Sbjct: 504 VRAWGVLLGVVRAWRVLLGVVRAWGVLLG 532
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR G+LLG++ A LLGV AWG+ G
Sbjct: 564 VRAWGVLLGVVRAWGVLLGVVQAWGVLIG 592
Score = 31.1 bits (67), Expect = 0.57
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR G+LLG++ A LLGV AWG+ G
Sbjct: 454 VRAWGVLLGVVRAWGVLLGVVRAWGVLLG 482
Score = 31.1 bits (67), Expect = 0.57
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR G+LLG++ A LLGV AWG+ G
Sbjct: 524 VRAWGVLLGVVRAWGVLLGVVRAWGVLLG 552
Score = 31.1 bits (67), Expect = 0.57
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR G+LLG++ A LLGV AWG+ G
Sbjct: 534 VRAWGVLLGVVRAWGVLLGVVRAWGVLLG 562
Score = 31.1 bits (67), Expect = 0.57
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR G+LLG++ A LLGV AWG+ G
Sbjct: 544 VRAWGVLLGVVRAWGVLLGVVRAWGVLLG 572
Score = 31.1 bits (67), Expect = 0.57
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR G+LLG++ A LLGV AWG+ G
Sbjct: 554 VRAWGVLLGVVRAWGVLLGVVRAWGVLLG 582
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR G+LLG++ A LLGV AW + G
Sbjct: 464 VRAWGVLLGVVRAWGVLLGVVRAWRVLLG 492
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR +LLG++ A LLGV AWG+ G
Sbjct: 484 VRAWRVLLGVVRAWGVLLGVVRAWGVLLG 512
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR G+LLG++ A LLGV AW + G
Sbjct: 494 VRAWGVLLGVVRAWGVLLGVVRAWRVLLG 522
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 420 VRLVGLLLGILAASTALLGVAVAWGLPAG 506
VR +LLG++ A LLGV AWG+ G
Sbjct: 514 VRAWRVLLGVVRAWGVLLGVVRAWGVLLG 542
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 329 SKPRTPQHHLVHVLNVDYSEDEDE-FVEDIVPELVLDALSLRDPELTEDDALDQETEDGE 153
++P T + H V +D++E +V +++ E VL S+ PE +DD ET DG+
Sbjct: 387 TEPLTDDDFVHHDDQVPTEDDDNENWVPEVIQEHVLGKDSV--PETADDDEECDETSDGK 444
>SB_25668| Best HMM Match : Sigma70_r1_1 (HMM E-Value=1.2)
Length = 449
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Frame = -1
Query: 251 EDIVPELVLDALSLRDPELT-----EDDALDQETEDGEE 150
E + P++ D + + DPE+ EDD + TED EE
Sbjct: 163 ESLPPDVFEDVVGVLDPEMNIDSDAEDDTFEDTTEDSEE 201
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Frame = -1
Query: 251 EDIVPELVLDALSLRDPELT-----EDDALDQETEDGEE 150
E + P++ D + + DPE+ EDD + TED EE
Sbjct: 349 ESLPPDVFEDVVGVLDPEMNIDSDAEDDTFEDTTEDSEE 387
>SB_7094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = -1
Query: 332 ESKPRTPQHHLVHVLNVDYSEDEDEFVEDIVP-ELVLDALSLRD--PELTEDDALDQETE 162
+ K Q + V + + D+D E + P + A L D +L+ DD+L+
Sbjct: 120 QDKKAQDQREIRQVTEIAFVGDDDVVSEQVPPPQSSASAQKLHDVLEDLSSDDSLNAFEA 179
Query: 161 DGEEAVRY-VY*CLYIIFLSFPSNCFL 84
+GE A Y ++ C +F + PS+ L
Sbjct: 180 EGESATGYRLFRCR--VFSTLPSDYML 204
>SB_20713| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 492
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/57 (26%), Positives = 35/57 (61%)
Frame = -1
Query: 314 PQHHLVHVLNVDYSEDEDEFVEDIVPELVLDALSLRDPELTEDDALDQETEDGEEAV 144
P+ + + + ++ D+F EDI+ EL+LD + +R +++++D+E+E E+ +
Sbjct: 318 PEDEPISLAPLHIEDEVDDFSEDILRELMLDEI-IR-WRSRDEESIDKESESVEKDI 372
>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 28.7 bits (61), Expect = 3.0
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = -1
Query: 347 VQEADESKPRTPQHHLVHVLNVDYSEDEDEFVEDIVPELVLDALSLRDPELTEDD-ALDQ 171
V+ D +P TP H + D ++D+DE +D E++ D + E++ DD LD+
Sbjct: 333 VRSDDLFEPLTPDHSPTDLFMSDEADDDDE--QDAYEEILSD-----EEEMSLDDGTLDE 385
Query: 170 ETEDGEEAVRYVY*CLYIIFLSF-PSNCFLFMYFYLALKTCE 48
+ + Y + +SF P C L +KT E
Sbjct: 386 ASVQFADMELYSEDAWMSVSVSFNPYQCDLSQLMACVIKTKE 427
>SB_39491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 348 LMGQLCKDRFEYLASSPNTARWVHVRLVGLLLGILAASTALL 473
L G K+R + + S+P TA ++H LVG++ AS LL
Sbjct: 2 LFGATLKERVQSIGSAPGTAMFLH-WLVGMVYVFYFASFVLL 42
>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -2
Query: 511 SFPAGKPHATATPNKAVEAASIPRSRPTSRTCTQRAVLGDDARYSNRSLHSCPIR 347
SFP G P +A+PN S+ +S + R +L D R S SL S P+R
Sbjct: 1046 SFPKGLPDLSASPNLPDGVTSL-----SSSSSLLRDILADAVRSSESSL-SSPVR 1094
>SB_26154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 8/48 (16%)
Frame = -1
Query: 278 YSED--EDEFVEDIVPELVLDALSLR-----DPELTEDDA-LDQETED 159
++ED E+ +EDI+P+L++D LS + D L E A LD++ ED
Sbjct: 127 FTEDLIEEFLIEDIIPDLLIDVLSHKKTLALDVILNELKAHLDEDMED 174
>SB_58313| Best HMM Match : UPF0180 (HMM E-Value=3.4)
Length = 478
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 154 RKQYAMFINVYTLFFYHFLRTVFCLCIFILH 62
RKQ ++ INV L+ + T+FC + +H
Sbjct: 136 RKQASLHINVRELYVVYICLTIFCSAMINVH 166
>SB_42367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = -1
Query: 284 VDYSEDEDEFVEDI-----VPELVLDALSLRDPELTEDDALDQETEDGE 153
+DY EDE E V+ + P+ D+ S D EL E+ L++E E+GE
Sbjct: 4 LDYEEDEGEIVDPLPAKEDTPKKPADS-SKEDGEL-EEGELNEEGEEGE 50
>SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)
Length = 997
Score = 27.5 bits (58), Expect = 7.0
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = -1
Query: 284 VDYSEDEDEFVEDI-----VPELVLDALSLRDPELTEDDALDQETEDGE 153
+DY EDE E V+ + P+ D+ S D EL E+ L++E E+GE
Sbjct: 852 LDYEEDEGEIVDPLPAKEDTPKKPADS-SKEDGEL-EEGELNEEGEEGE 898
>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 189 FGQL--RVSEAQRVKDKFWNYVFYKFIFIFGVINVQYMDEVMLWCSWFTL--VGFLHLMG 356
+G+L + E +RV + VFYK I + + + +++ L+C ++ L VG +G
Sbjct: 359 YGELADELFEIRRVYTILGSCVFYKGILLANHLFSEDFEDITLYCKYYCLLDVGKQQRVG 418
Query: 357 QL 362
QL
Sbjct: 419 QL 420
>SB_38230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 467 SCGGGQYTQE*TDQSNMHPTCCVGRRR*IFK 375
+CGGGQ ++ T+ + P+C G R+ + K
Sbjct: 110 TCGGGQRSRYETEFVSGEPSCKAGTRKSVLK 140
>SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 83 TENSSKEMIKK*CININKHSVLLPRRLRFPDPARRLRSAPGL 208
T +++ I + I K +++ RL F + RR+R PGL
Sbjct: 70 TPDTTANQITSMFVKIRKQELIIHIRLTFENEHRRIRLQPGL 111
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 338 ADESKPRTPQHHLVHVLNVDYSEDEDEFVEDIVPE 234
AD+ + Q ++ Y++DE ++VED+VPE
Sbjct: 1130 ADQQAYPSEQVYVEGQGEAQYADDEWDYVEDVVPE 1164
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 149 AVRYVY*CLYIIFLSFPSNCFLFM--YFYLALKTCELFLCI 33
++RY+Y C + IF + S FL++ F AL ++C+
Sbjct: 1878 SLRYLYLCAFCIFALYLSLRFLYLCAIFVFALSVSLRYICL 1918
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,036,870
Number of Sequences: 59808
Number of extensions: 386132
Number of successful extensions: 1320
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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