Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0060
(395 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48202| Best HMM Match : GARS_B (HMM E-Value=0.49) 125 1e-29
SB_58684| Best HMM Match : AMP-binding (HMM E-Value=0.36) 35 0.021
SB_8167| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.064
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0) 33 0.064
SB_37108| Best HMM Match : AMP-binding (HMM E-Value=2e-09) 33 0.11
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06) 33 0.11
SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45) 32 0.15
SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44) 31 0.26
SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.26
SB_48304| Best HMM Match : AMP-binding (HMM E-Value=0) 30 0.78
SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16) 29 1.0
SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18) 29 1.8
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_42438| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_26840| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_54490| Best HMM Match : AMP-binding (HMM E-Value=4.2039e-45) 27 7.3
SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
>SB_48202| Best HMM Match : GARS_B (HMM E-Value=0.49)
Length = 293
Score = 125 bits (302), Expect = 1e-29
Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 5/133 (3%)
Frame = +1
Query: 10 EWIMTEQAAYCYSMVIVPLYDTLGANACAFIVNQTEMAVVICEDDKKANLLLDQSPRC-- 183
EW++ EQA ++ VI PLYDTLG +ACAFI+NQ +M++V+C D K LLL ++ +C
Sbjct: 148 EWVLIEQACAMHAKVITPLYDTLGPDACAFIINQAKMSMVVC-DAAKIPLLLQRADQCPT 206
Query: 184 LRKLITIK-EVSPSTFQRAKSRGVEILKFSDVEIQGAQKDHPFVP--PKPENLCTICYTX 354
L+ +I I +V+ Q + G++I+ FSDVE G K HP+ PKP++L +CYT
Sbjct: 207 LKFIIKINPDVTSEEKQEGERNGIKIISFSDVEAMG--KAHPYEKKLPKPDDLAVVCYTS 264
Query: 355 GTTGMPKGVMLTH 393
GTTG PKG M+TH
Sbjct: 265 GTTGNPKGAMITH 277
>SB_58684| Best HMM Match : AMP-binding (HMM E-Value=0.36)
Length = 237
Score = 35.1 bits (77), Expect = 0.021
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +1
Query: 325 ENLCTICYTXGTTGMPKGVMLTH 393
+++ I Y+ GTTG+PKGV+LTH
Sbjct: 141 QDVAYILYSSGTTGLPKGVLLTH 163
>SB_8167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 33.5 bits (73), Expect = 0.064
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 328 NLCTICYTXGTTGMPKGVMLTH 393
+LC I YT G+TG PKGV + H
Sbjct: 32 HLCYIIYTSGSTGQPKGVEIEH 53
>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 1381
Score = 33.5 bits (73), Expect = 0.064
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 328 NLCTICYTXGTTGMPKGVMLTH 393
+LC I YT G+TG PKGV + H
Sbjct: 180 HLCYIIYTSGSTGQPKGVEIEH 201
>SB_37108| Best HMM Match : AMP-binding (HMM E-Value=2e-09)
Length = 488
Score = 32.7 bits (71), Expect = 0.11
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 10 EWIMTEQAAYCYSMVIVPLYDTLGANACAFIVNQTEMAVVICE 138
+W+++ + + + +V +Y TLG A A +N+TE+ VI +
Sbjct: 160 DWMVSALSCFGFGFPVVTIYATLGDEAVAHGINETEVNFVITD 202
>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
Length = 757
Score = 32.7 bits (71), Expect = 0.11
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Frame = +1
Query: 61 PLYDTLGANACAFIVNQTEMAVVICEDDKKANLLLDQSPRCLRKLITIKEVSPSTFQRAK 240
P+Y GA A +V + D+ A L+D S + + IT ++ + + A+
Sbjct: 511 PVY-LYGAQAIGAVVTTANPGYTV---DELAYQLIDSSAKYI---ITDSKLYHTAIEAAR 563
Query: 241 SRGVEILKFSDVEI-------QGAQKDHPFVPPKPENLCTICYTXGTTGMPKGVMLTH 393
VE + F VE G++ + P P + Y+ GTTG+ KGV+ +H
Sbjct: 564 KANVEHV-FESVEFFNDLLKDDGSKLKGVYSPTDPTEAICMPYSSGTTGVSKGVLQSH 620
>SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)
Length = 1038
Score = 32.3 bits (70), Expect = 0.15
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +1
Query: 196 ITIKEVSPST---FQRAKSRGVEILKFSDV---EIQGAQKDHPFVPPKPENLCTICYTXG 357
I I PST +QR + G +I+ D+ ++ + H VP + I YT G
Sbjct: 237 IKISSFKPSTVVLYQRDQCTG-DIIPGRDITWDQVMERAEPHDCVPVLATDPLYILYTSG 295
Query: 358 TTGMPKGVM 384
TTG PKG++
Sbjct: 296 TTGDPKGIV 304
>SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44)
Length = 393
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 289 AQKDHPFVPPKPENLCTICYTXGTTGMPKGVMLTH 393
A +H V E+ + YT G+TG PKGV+ TH
Sbjct: 4 ASDEHDTVWVDAEDPLFMLYTSGSTGKPKGVLHTH 38
>SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 31.5 bits (68), Expect = 0.26
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 271 DVEIQGAQKDHPF-VPPKP---ENLCTICYTXGTTGMPKGVMLT 390
D+ ++ A + P PP+P E+ + YT G+TG PKG++ T
Sbjct: 242 DIPLEEAMAEQPDECPPEPMDSEDPLFLLYTSGSTGQPKGIVHT 285
>SB_48304| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 374
Score = 29.9 bits (64), Expect = 0.78
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 265 FSDV-EIQGAQKDHPFVPPKPENLCTICYTXGTTGMPKGVMLTH 393
F DV E G+ + P + Y+ GTTG+ KGVM +H
Sbjct: 113 FKDVLEDDGSALTGIYCPSDTTETACLPYSSGTTGLSKGVMQSH 156
>SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16)
Length = 980
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 301 HPFVPPKPENLCTICYTXGTTGMPKGVMLTH 393
+P+ P PE + + ++ TTGM GV ++H
Sbjct: 474 NPYRAPTPEMIAYLDFSVSTTGMLSGVKMSH 504
>SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)
Length = 1076
Score = 28.7 bits (61), Expect = 1.8
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +1
Query: 148 KANLLLDQSPRCLRKLI-TIKEVSPSTFQRAKSRGVEILKFSDVEIQGAQKDHPFVPPKP 324
+A+LLL Q L+K E P F+ + + + F+ V++Q +++ P +
Sbjct: 115 EASLLL-QFKETLQKYDGNSSENHPKPFRIINDQALSSIGFTLVKLQDIKQELPKL---- 169
Query: 325 ENLCTICYTXGTTGMPKGVMLTH 393
+L + T GTTG P VM+ H
Sbjct: 170 -SLAFVIQTSGTTGKPTTVMVPH 191
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = -3
Query: 387 QHNAFRHPSRSXRITYCTKVFRFRW-----DKRMVLLSSLYFDVRELQNLNTTA 241
QH +R R+ +CT F+W + V+L++L + L+N TA
Sbjct: 730 QHGEYRERKRAVNNKFCTTSMEFKWTHEIFGSKEVILNTLRSTIVSLENNIPTA 783
>SB_42438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 271 DVEIQGAQKDHPFVPPKP---ENLCTICYTXGTTGMPK 375
D +Q K+ ++PP ++L + Y+ GTTG PK
Sbjct: 247 DERLQKENKELGYLPPVESSLDDLAYVVYSSGTTGKPK 284
>SB_26840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 196 ITIKEVSPSTFQRAKSRGVEILKFSDVEIQGAQKDHPFVPPKPENLCTICYTXGTTGM 369
+TI+ + S E ++ ++E QG Q HP PP+ I + TTG+
Sbjct: 198 LTIESLKNSVKDEELRTYEECIEHWEIESQGEQS-HPTNPPELSECALITFDTETTGL 254
>SB_54490| Best HMM Match : AMP-binding (HMM E-Value=4.2039e-45)
Length = 565
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 319 KPENLCTICYTXGTTGMPKGVMLT 390
+PE+ + +T G+TG PK V T
Sbjct: 193 RPEDPVAVVFTSGSTGEPKAVTFT 216
>SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 300 VLLSSLYFDVRELQNLNTTALGALKCRRRYFLNCNQFSEA 181
VLLSSLY +++ L A G L N +F+EA
Sbjct: 67 VLLSSLYLREKDVLQLQFLASGKLDEMNELISNLKEFAEA 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,534,775
Number of Sequences: 59808
Number of extensions: 235126
Number of successful extensions: 550
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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