Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0054
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 2e-24
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11) 34 0.14
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23) 29 3.0
SB_10935| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11) 29 4.0
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 29 5.3
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_15123| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09) 28 9.2
SB_40778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_30920| Best HMM Match : DUP (HMM E-Value=4.6) 28 9.2
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44) 28 9.2
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 9.2
>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 109 bits (263), Expect = 2e-24
Identities = 48/61 (78%), Positives = 52/61 (85%)
Frame = +1
Query: 1 IQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANYGGAAYDAVAQRE 180
I NFKILQ+ FKK G DKI+P+DKLVKGRFQDNFEFLQWFKKFFDANYGG Y+AV R
Sbjct: 59 IANFKILQSAFKKCGCDKIIPVDKLVKGRFQDNFEFLQWFKKFFDANYGGQEYNAVEARH 118
Query: 181 G 183
G
Sbjct: 119 G 119
>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
Length = 1491
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +1
Query: 325 SRISQSAKGDSKVV---DELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQ 489
+R ++ K K++ DELN +INELK D L KE + K +++E +E E +
Sbjct: 589 TRRNELQKKQEKIIKENDELNDRINELKKENDYLAKEIKDFANKRKEMETSYEEKERE 646
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 370 ELNHQINELKATVDGLEKERDFYFGKLRD 456
EL I EL+AT+ G+E+ERD Y +L D
Sbjct: 3415 ELREAIEELRATLKGVEEERDRYENELDD 3443
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 364 VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATED 543
VDE N ++ E K + +K+ GK+ ++ V ++E+ ++ V DI A D
Sbjct: 1349 VDETNKEVQETKKEIQETKKDVHEVKGKVSEMAVDLASLKEEFSSRNVNSKKDITAAKGD 1408
Query: 544 GFAPPE-EIDGDNPHPPEE 597
A + D N H P++
Sbjct: 1409 EAASGKTSHDPGNKHLPKK 1427
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 361 VVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQ 510
V+ +LNH ++EL D G L DIE + + +H P ++
Sbjct: 3258 VIRDLNHTVHELVRNATKTANRFDKVKGILNDIETVFFSKDNRHEHPTIK 3307
>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
Length = 1178
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +1
Query: 328 RISQSAKGDSKVVDELNHQINELKATVD--GLEKERDF---YFGKLRDIEVICQEMEEQH 492
+IS + S + ++ + QINELK+ V+ G + D+ K+ + E EM++QH
Sbjct: 224 KISSMTRESSTLKEQKDKQINELKSLVEQSGENAQHDYEKKLNDKIAEFEQEKFEMQKQH 283
Query: 493 NAPIVQKILD 522
I Q++LD
Sbjct: 284 TNNI-QELLD 292
>SB_10935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/45 (22%), Positives = 26/45 (57%)
Frame = +1
Query: 349 GDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEME 483
G+ + + ++ Q+ + A+VD + + + G L D+E +C+ ++
Sbjct: 25 GELERLPDIIKQVQDASASVDAISSQTEVLEGLLLDLEEVCENLD 69
>SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 240 GFLSGSGPRGG-RAPVPHGQTFSLRHCVICRTSIVGVKEFLEPLQKLKIILETTLHQ 73
G S RG RAP P QT +C C T+ VG++ L P L I ++ H+
Sbjct: 28 GIASHEPLRGAERAPCPKCQTSRKYYCYECYTT-VGIERSLVPSVTLPITVDIVKHR 83
>SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)
Length = 285
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 364 VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQ 489
VDE N +++E+K VD KE GKL + E++E+
Sbjct: 227 VDETNKEVHEVKGKVDETNKEVHEVKGKLDETNKEVHEVKEK 268
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +1
Query: 364 VDELNHQINELKATVDGLEKERDFYFGKLRDIE----VICQEMEEQHN 495
+DE + +I L+ T +GL+KE G LR++E +E+++ HN
Sbjct: 1157 LDEASQKIASLEETRNGLQKEAGDLRGSLREVEKARLEARRELQQLHN 1204
>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2060
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 76 VKGRFQDNFEFLQWFKKFFDANYGGAAYD 162
V + +DNF +QW K F D Y + +D
Sbjct: 1775 VSKQMKDNFPCMQWTKNFLDNAYSTSEHD 1803
>SB_15123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +1
Query: 286 KANTTVRSPPVNLSRISQSAKGDSKVVDELNHQINELKATVDGLEKERD 432
+A T++S + ++ +S+ + + + +H +NEL D L K+RD
Sbjct: 85 RARETIQSLKLEIANLSKLVEQGAGLTMGQDHSVNELLKIKDDLTKDRD 133
>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/53 (28%), Positives = 32/53 (60%)
Frame = +1
Query: 274 QTIGKANTTVRSPPVNLSRISQSAKGDSKVVDELNHQINELKATVDGLEKERD 432
Q I + ++TV+ + L++ ++ D + V E+ +++NELK + ++ ERD
Sbjct: 184 QVITRKDSTVQDFRIELAK----SRLDKEKVTEMENELNELKHKLQQVQDERD 232
>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
Length = 712
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 355 SKVVDELNHQINELKATVDGLEKERDFYFGKLRDIE 462
+K +DEL I LK + L++ + G+ RD+E
Sbjct: 638 AKQIDELEQHIETLKQQNNSLQRNNSSFEGEKRDLE 673
>SB_40778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Frame = +1
Query: 415 LEKERDFYFGKLRDIEVICQEMEEQHNAPIVQK---------ILDILYATEDGFAPPEEI 567
L K D KL D+ IC+E E+++ K +L LY+ ++ P E
Sbjct: 85 LYKGNDSEVVKLYDLTSICEESGEEYDEAKKAKFTIVASANYLLSELYSPDNVHITPHES 144
Query: 568 DGDNPHPPEED 600
G++ H +ED
Sbjct: 145 SGESQHSSKED 155
>SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)
Length = 404
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 156 CRTSIVGVKEFLE--PLQKLKIILETTLHQFVNG 61
C T+I GVKEFL P +K L+ L Q+ G
Sbjct: 306 CPTAIPGVKEFLNSVPAKKCTARLDLALQQYEKG 339
>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
Length = 749
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Frame = -1
Query: 309 RSDCCISFP---------DGLGSSCDFGDRGDGFLSGS 223
R+D C+S P DG+G +CD GDG GS
Sbjct: 509 RADNCVSVPNADQVDTDSDGIGDACDSDTDGDGVSDGS 546
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +1
Query: 367 DELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATEDG 546
D++ ++ EL+ ++ L ++ Y GKL D+E + E H+ ++++ +A E
Sbjct: 705 DKMMTRLKELETQMEILTRQASEYRGKLVDVEEKPSRVREVHS-----ELVENTFAEEAQ 759
Query: 547 FAPPEEIDGDNPHPPEEDE 603
PP ID + EDE
Sbjct: 760 IEPP-SIDKRSRVKELEDE 777
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +1
Query: 331 ISQSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQ 489
+++ + K++D+LN+QI L+ D +E Y + +E +E+E++
Sbjct: 1119 LNKGLEKKEKIIDDLNYQIKMLRKNFDANNQELISYKVRTDGLEAEKKEIEKR 1171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,988,815
Number of Sequences: 59808
Number of extensions: 444368
Number of successful extensions: 1379
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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