Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0036
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)                79   1e-20
SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_49778| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 31   1.1  
SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)               30   2.0  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_58558| Best HMM Match : EGF (HMM E-Value=0)                         29   4.6  
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)                 28   6.1  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.1  
SB_36282| Best HMM Match : HHH (HMM E-Value=7.4)                       28   8.0  
SB_2045| Best HMM Match : EGF (HMM E-Value=0)                          28   8.0  

>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
          Length = 368

 Score = 79.4 bits (187), Expect(2) = 1e-20
 Identities = 34/55 (61%), Positives = 47/55 (85%)
 Frame = +2

Query: 308 KVSGHKGPEELSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQ 472
           +V+ H+GP++L AA++   VV IPAGVPRKPGMTRDDLFNTNASIV++++ + A+
Sbjct: 55  QVTSHQGPDDLKAALEGCSVVAIPAGVPRKPGMTRDDLFNTNASIVKNLSEACAK 109



 Score = 38.3 bits (85), Expect(2) = 1e-20
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +2

Query: 575 RVLGVTTLDVVRAATFVGEINGVD 646
           ++LGVTTLD+VRA TFV E  G+D
Sbjct: 109 KILGVTTLDIVRAHTFVAEAKGLD 132


>SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -2

Query: 393 RGTPAGMTTTSASLMAADSSSGPLWPLTLAGVFMWERSAATPGVTGAMS-YKASLVT 226
           RG P+GM+TT++S  ++D S   L  +T  G  +   S+ TPG  GA++    SLVT
Sbjct: 779 RGLPSGMSTTNSSTQSSDPS--VLGSVTSVGNLV--TSSLTPGFLGALAELVRSLVT 831


>SB_49778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = -1

Query: 631 LADEGGSADYVQSGDAEHAVRVVHSRLLEHFRGNRHCRV-NRVCDDGH-NSFGCILSNGQ 458
           + D G   D+ +  D  H     H ++ +H +   H ++ +++ DDG     G +  +G+
Sbjct: 29  MTDHGKMTDHGKMTD--HGKMTDHGKMTDHGKMTDHSKMTDQMIDDGKMTDHGKMTDHGK 86

Query: 457 SNVTDNGSISVE*VITGHSRFTGYSCWDDY 368
             +TD+G ++    +T HS+ T ++   D+
Sbjct: 87  --MTDHGKMTDHGKMTDHSKMTDHNKMTDH 114


>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
 Frame = +2

Query: 200 ALLLKQNPLVTRLALYDIAPVT-PGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVI 376
           A ++  +P VT L   + A  T  GV   L+  +TP +      PE+     +D DV+VI
Sbjct: 563 AQVIASSPNVTVLVKDEPADATRDGVKRPLTDTSTPTQP-----PEKKGRPNQDNDVIVI 617

Query: 377 PAGVPRKPGMTRDDLFN-TNASIVRDIALSIAQNAPKAI 490
               P KP     +L N  + +IV++I+    ++  KA+
Sbjct: 618 DPPSPPKPRTIPSELANGLDKAIVKEISDMNDEDLLKAV 656


>SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)
          Length = 462

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 341 SAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNA-PKAIVAIITNPVN 517
           + A KDA VVV+  G     G  + +   ++A + RD   ++  +A P   V     P N
Sbjct: 202 AVAFKDASVVVLLDGKAINEGTDKKEYLLSHAKLFRDYGKALEAHAKPDCKVLTAGGPAN 261

Query: 518 STVPIASE 541
            +  IAS+
Sbjct: 262 FSTFIASK 269


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = -1

Query: 523 CRVNRVCDDGHNSFGCILSNGQS----NVTDNGSISVE*V--ITGHSRFTGYSC 380
           C  +  C DG NS+ C  + G +    NVT N  IS   +   T H    GYSC
Sbjct: 674 CSEHGACIDGVNSYTCACNLGYTGSTCNVTVNDCISNPCIHGATCHDGLLGYSC 727


>SB_58558| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 523 CRVNRVCDDGHNSFGCILSNGQSNVTDNGSISVE*VITGHSRFTGYSCWDDYN 365
           CR N  C D HN++ C  + G   V  N  I++   I    +  G+ C D  N
Sbjct: 168 CRNNGTCTDMHNAYRCQCTQG--FVGKNCQININDCIPDPCQNGGWCCCDLVN 218


>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
          Length = 606

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 248 DIAPVT--PGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVP 391
           D +PVT  PG++++    + P      K P E S A  D     IP   P
Sbjct: 555 DSSPVTTQPGLSSEKPEASEPEPAPEPKSPAENSTASNDTSTTAIPLPPP 604


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 586  RHHSGRSPRCHLRRRDQWRG 645
            R H+    R H+RRR  WRG
Sbjct: 2232 RWHAAHRARLHIRRRGHWRG 2251


>SB_36282| Best HMM Match : HHH (HMM E-Value=7.4)
          Length = 152

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/77 (22%), Positives = 36/77 (46%)
 Frame = -2

Query: 555 AFLSTSEAIGTVELTGFVMMATIALGAF*AMDKAMSRTMEALVLNRSSRVIPGLRGTPAG 376
           AF    ++   V+ T F ++ATI  GAF  + +   ++ + +   + + ++P        
Sbjct: 74  AFWPEYDSKPPVKFTDFQILATIGKGAFGHVLQVQHKSTDEVFAMKHNEILP---SALCD 130

Query: 375 MTTTSASLMAADSSSGP 325
           +     S++ +D  SGP
Sbjct: 131 LKQVGLSILQSDRKSGP 147


>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -1

Query: 523 CRVNRVCDDGHNSFGCILSNGQSNVTDNGSISVE*VITGHSRFTGYSCWDDYN 365
           C     C DG N F C+ + G +    + +I  +   +G     G +C D  N
Sbjct: 636 CAGTGTCKDGINDFSCVCNTGYTGAKCDSNID-DCAASGQPCQNGATCKDGVN 687


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,228,486
Number of Sequences: 59808
Number of extensions: 536587
Number of successful extensions: 1641
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)