Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0034
(343 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 31 0.32
SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06) 29 0.75
SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_14953| Best HMM Match : MT-A70 (HMM E-Value=0.0044) 27 5.3
SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 26 7.0
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28) 26 7.0
SB_18591| Best HMM Match : Mfp-3 (HMM E-Value=9.6) 26 9.2
SB_14022| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7) 26 9.2
SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_9347| Best HMM Match : DUF1572 (HMM E-Value=9.7) 26 9.2
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 30.7 bits (66), Expect = 0.32
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 19 PPSPPRSAMLLPASQRRLRALGSAAWGLPIIQHLP--IASRAYSTTSNCIPLRHR 177
P +PPR+A A+ R + + A LP H P AS +Y+T P+RHR
Sbjct: 994 PHTPPRAAFTPYATVRLIYPIRHRALNLP---HTPPHAASTSYATVRLIYPIRHR 1045
Score = 27.1 bits (57), Expect = 4.0
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 19 PPSPPRSAMLLPASQRRLRALGSAAWGLPIIQHLP--IASRAYSTTSNCIPLRHR 177
P +PPR+A A+ R+ + LP H P AS Y+T P+RHR
Sbjct: 574 PHTPPRAASTPYATACRIFTIRHRTLHLP---HTPPRSASTPYATELRIYPIRHR 625
Score = 26.6 bits (56), Expect = 5.3
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 1 RQRSVGPPSPPRSAMLLP-ASQRRLRALGSAAWGLPIIQHLPIASRAYSTTSNCIPLRHR 177
R R+ P P+ A P A+ R + + A LP+ S +Y+T + P+RHR
Sbjct: 651 RHRAPHLPHTPQCATFTPYATARCIYTIRHRAQHLPLTPPRA-TSNSYATARHIYPIRHR 709
>SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)
Length = 362
Score = 29.5 bits (63), Expect = 0.75
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 263 SCKHAEFSECESERFATRTLSCAY 192
SCK +F +C+ R T+T SC Y
Sbjct: 77 SCKALDFVDCKGPRNFTKTFSCRY 100
>SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -1
Query: 283 LEHRRSSAANTQNSPNVRVSDLRRAHCRAHTSISNTCVLVG 161
+ + + +AA + P + + L R H H S+++ +LVG
Sbjct: 866 MNYAKMTAAVADSCPRTQCAHLTRTHTHTHYSMASIAILVG 906
>SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -1
Query: 235 VRVSDLRRAHCRAHTSISNTCVLVGYNSMSLNRLWMRSADAG*SGGPTRHSQALATS 65
+R++DL C S +++GYN M + ++R+ G P H+ + T+
Sbjct: 112 LRLTDLFNLSCARQRSRILNSIIIGYNVMDIATTFIRAFWLEYCGSPVVHASSHGTN 168
>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 2.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 123 DRIQSLFNDIELYPTKTQVFEMLV 194
D+++ N++E+Y TK + +MLV
Sbjct: 97 DKLEEWLNEVEMYSTKKDIVKMLV 120
>SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 702
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 331 MFHXGDSGLLXTCLACLEHRRSSAANTQNSPNVRVSDL 218
+F G G L C+A + +RS +N + N+ +SDL
Sbjct: 35 VFLVGSVGNLVVCMAVIRRKRSRTSNNIFTFNLALSDL 72
>SB_14953| Best HMM Match : MT-A70 (HMM E-Value=0.0044)
Length = 224
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 197 RTTVCASQIAHSHIRRILRVCS*ATPVLK 283
++ +CA ++ S IRRI ++C A ++K
Sbjct: 192 KSEICAQIVSRSVIRRISKICQSAEIIIK 220
>SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 48 TSSLTKEVASAWECRVGPPDHPASADRIQSLFNDI 152
TS T E+ RVG HPA +++F D+
Sbjct: 107 TSEFTSELKIQRRVRVGSCKHPAKKADFETVFGDV 141
>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 43 MLLPASQRRLRALGSAAWGLPIIQHLPIASRAYSTTSNC 159
+L+ +Q + + G +G ++HL +A R + TTS C
Sbjct: 304 VLVSQTQLTINSQGFRNYGPITLEHLLVALRRHVTTSEC 342
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 183 EMLVCARQCARRKSLTLTFGEFCVFAAELRRCSRQAR 293
E ++ AR C + KS+T+ FC + + C +A+
Sbjct: 240 ECVMKARACRKEKSVTVAHRGFCGACSLAKPCEHRAK 276
>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
Length = 998
Score = 26.2 bits (55), Expect = 7.0
Identities = 20/86 (23%), Positives = 35/86 (40%)
Frame = +1
Query: 7 RSVGPPSPPRSAMLLPASQRRLRALGSAAWGLPIIQHLPIASRAYSTTSNCIPLRHRYSR 186
++ P+ RS +L SQ + + +++ GL + + L S S L+ +
Sbjct: 169 KAYNTPAANRSVLLRITSQH-VSVISTSSSGLLLEKKLREISFCQQVDSVMRSLKEAFHA 227
Query: 187 CWYAHDSVRVANRSLSHSENSACLQL 264
W A S +V H + C QL
Sbjct: 228 AWQAAGSTKVCELCPLHHLHQLCTQL 253
>SB_18591| Best HMM Match : Mfp-3 (HMM E-Value=9.6)
Length = 189
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 274 RRSSAANTQNSPNVRVSDLRRAHCRAHTSISNTCVLVGY 158
RRS+ +T+ PN R RAH H +++ V+ Y
Sbjct: 142 RRST--HTRTRPNARTHRHTRAHAHIHNTLARRGVITKY 178
>SB_14022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 136 AYSTTSNCIPLRHRYSRCWYAHDSVRVANRSL 231
A + + P HR+S+ W AH+ V R L
Sbjct: 866 ALKSMKDTAPHVHRHSQLWTAHEKVDATKRLL 897
>SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7)
Length = 504
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 39 CDATSSLTKEVASAWEC 89
C+A S+ T EV WEC
Sbjct: 12 CEAISAQTYEVVEVWEC 28
>SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 126 RIQSLFNDIELYPTKTQVFEMLVC 197
++ L+N +E KT FEML+C
Sbjct: 16 KVNQLYNRVETVLKKTPGFEMLLC 39
>SB_9347| Best HMM Match : DUF1572 (HMM E-Value=9.7)
Length = 214
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 39 CDATSSLTKEVASAWEC 89
C+A S+ T EV WEC
Sbjct: 12 CEAISAQTYEVVEVWEC 28
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,959,662
Number of Sequences: 59808
Number of extensions: 228379
Number of successful extensions: 680
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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