Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0033
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   30   1.8  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           28   5.6  
SB_18493| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_53605| Best HMM Match : Ribosomal_L36 (HMM E-Value=1.5)             28   5.6  
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    27   9.7  

>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 267 GRRGLG-MTQEGQTRWR*RSPVLYSNKTVTQLTQAGRHLPVLN*SFKERSVDPLTWS 100
           G R  G ++   ++RW+ R+P   S+ T ++   + RH+P+++   +E    PL W+
Sbjct: 111 GNRTTGSLSPVSKSRWKERTP---SDSTPSKSRDSFRHVPIVSPPLEEPVSPPLPWA 164


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 288 PPRL-APKGRR-GLGMTQEGQTRWR*RSPVLYSNKTVTQLTQAGRHLP 151
           PPRL  P G + G+G T+ G  +     P L    +  Q+ + G+HLP
Sbjct: 717 PPRLQGPMGMKVGVGSTEGGMQQMMGYPPRLQRAPSGDQMQRPGQHLP 764


>SB_18493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 95  TRDHVSGSTLLSLND*FNTGRCRPACVSCVT 187
           T D  S ST  ++ND ++  RCR     CVT
Sbjct: 24  TADLASNSTRTAVNDPYSNPRCRCVLFRCVT 54


>SB_53605| Best HMM Match : Ribosomal_L36 (HMM E-Value=1.5)
          Length = 251

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 328 SPGLLTLEPPTDS*FKLVIALVSFWFILS*LCS 426
           SPG+  +E P DS   L I L+S + I+S LC+
Sbjct: 166 SPGMWNVEMPKDSVDDLRIDLMSEYIIISELCT 198


>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 210 ANVSATESGPPVSFPVLSYPSGLGGAVAK 296
           A V A ESGPP S P LS  S     VA+
Sbjct: 339 AGVQAPESGPPTSAPFLSPASAEKKTVAE 367


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 192 YLNIKPANVSATESGPPVSFPVLSYPS 272
           Y+N+KP N+   E   P+  P  + PS
Sbjct: 302 YMNVKPENMPVAEQAHPIPTPPKTRPS 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,781,492
Number of Sequences: 59808
Number of extensions: 388834
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)