Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0004
(537 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30777| Best HMM Match : SH2 (HMM E-Value=4e-10) 31 0.45
SB_52127| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=4.4) 31 0.79
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_45| Best HMM Match : Pkinase (HMM E-Value=0) 29 2.4
SB_10779| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_34188| Best HMM Match : Astacin (HMM E-Value=0) 28 4.2
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_56740| Best HMM Match : RBD (HMM E-Value=0.21) 27 7.3
SB_1987| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_28695| Best HMM Match : Ras (HMM E-Value=0) 27 9.7
SB_11166| Best HMM Match : CARD (HMM E-Value=0.001) 27 9.7
>SB_30777| Best HMM Match : SH2 (HMM E-Value=4e-10)
Length = 265
Score = 31.5 bits (68), Expect = 0.45
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +1
Query: 217 DTSDVYETSEPVSVVGRVPASGCASGDIMWLLNEPNQPYEDCEQLLCFRYYNGEGEECTA 396
++SD E + + ++ A+ D + E ++ YED + YY+ EEC
Sbjct: 46 ESSDFVPVEEIIKYYAKKKSNSSATSDGLRFQEEKDELYEDWKIQKAENYYDNP-EECIG 104
Query: 397 ESSTLPPRFKVDLKN 441
E + + +D KN
Sbjct: 105 EYENIKQDYTLDKKN 119
>SB_52127| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=4.4)
Length = 159
Score = 30.7 bits (66), Expect = 0.79
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 290 LAHPLAGTRPTTLTGSDVSYTSEVSTNVLLSQR-GISSDLMAKFHLNVPVNVSRGTQI 120
L + L T TLTG+ +SYT+ ST+V + G S + + V + VS G I
Sbjct: 24 LMNSLVRTMVGTLTGNGISYTAVSSTSVSIGDSIGASIGVSIVTSIGVSIGVSIGVSI 81
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 257 TLTGSDVSYTSEVSTNVLLSQRGISSDLMAKFHLNVPVNVSRGTQILKN 111
+LTG D ++ E ST + Q+ I+ + +H+ + + RGT +L +
Sbjct: 3117 SLTGGDGVFSIEPSTGQIRLQKAINREAKENYHVTITAS-DRGTPVLSS 3164
>SB_45| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 851
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 316 EPNQPYEDCEQLLCFRYYNGEGEEC 390
E P+ E LLC Y+ G+ EEC
Sbjct: 231 ERANPFASLEPLLCLEYHTGDIEEC 255
>SB_10779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 48 SNLTSYLNQCCFLGC*KQIVLIFKYLCSPGYIYRDV*VK 164
SN S+L+Q C KQI +YL S GYI++ + K
Sbjct: 724 SNKLSHLDQLCIA---KQIAAGMEYLASRGYIHKQLCTK 759
>SB_34188| Best HMM Match : Astacin (HMM E-Value=0)
Length = 844
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 138 IQGNTNT*KLTQFVFNSLENNTDLSTMSNLKTSKINEN 25
I TNT T N+ +NT ++T SN+ T+ I +N
Sbjct: 682 INTTTNTNMNTNTTINTTNSNTFINTTSNMTTNIITKN 719
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 253 SVVGRVPASGCASGDIMWLLNEPNQPYEDCEQLLCFRYYNGEGEEC 390
S+ +VP+S G + E Y+ +Q +C R Y G GE+C
Sbjct: 828 SICTKVPSSVACGGKVCHTHAECFT-YQGQKQCVCERGYQGNGEDC 872
>SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 272 GTRPTTLTGSDVSYTSEVSTNVLLSQRG 189
G+RP TL+G+ + TS S +V LS G
Sbjct: 593 GSRPVTLSGTVTAGTSSTSRSVTLSSVG 620
>SB_56740| Best HMM Match : RBD (HMM E-Value=0.21)
Length = 320
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 253 SVVGRVPASGCASGDIMWLLNEPNQPYEDCEQLLCF 360
S++ ++ GCA+ + WLL P P C ++ F
Sbjct: 21 SLLRQLAKGGCAARRLSWLLEYPVTPDTKCSRVKAF 56
>SB_1987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 90 C*KQIVLIFKYLCSPGYIYRDV*VKFG 170
C +V F+YL S G +YRD+ V FG
Sbjct: 74 CIACVVEGFEYLHSKGIVYRDLKVDFG 100
>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
Length = 1058
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 458 KRACAENEAGTKSRPSAITMRAL 526
KR AEN +G+ S S+ T+RAL
Sbjct: 110 KRISAENSSGSNSNDSSSTLRAL 132
>SB_11166| Best HMM Match : CARD (HMM E-Value=0.001)
Length = 720
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 307 LLNEPNQPYEDCEQLLCFRYYNGEGEECTAESSTLPPRFKVD 432
L ++ NQ +DC +CF Y G + E+ LP K D
Sbjct: 286 LNSKVNQFVKDCGHDVCFVYLAGHTVQLNGENYLLPTDIKPD 327
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,797,583
Number of Sequences: 59808
Number of extensions: 317095
Number of successful extensions: 720
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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