Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120072.Seq
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 86 3e-17
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.011
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 37 0.014
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.019
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.044
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.058
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 34 0.10
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 34 0.13
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 31 0.72
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 31 0.95
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 31 0.95
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 31 1.2
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 31 1.2
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5) 30 1.7
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.2
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.2
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 29 2.9
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06) 29 5.0
SB_11059| Best HMM Match : KID (HMM E-Value=0.046) 29 5.0
SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09) 29 5.0
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 29 5.0
SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32) 29 5.0
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8) 28 6.7
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 28 6.7
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_55305| Best HMM Match : Pre-SET (HMM E-Value=4.6) 28 8.8
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 85.8 bits (203), Expect = 3e-17
Identities = 35/65 (53%), Positives = 51/65 (78%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
E+D+ +L + GP+ +++LAK+K T KGFA+++F R DAA+AI+ L+G GYDHLILN
Sbjct: 194 ESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSGFGYDHLILN 253
Query: 699 VEWSK 713
VEW+K
Sbjct: 254 VEWAK 258
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +2
Query: 8 KIVTEYKYDNDNKKVKIVRTYKIEKCVVSKSIAKRK 115
KIVTEYK D++ K KI+ TY++E V+K IAKRK
Sbjct: 88 KIVTEYKRDDEGKLQKIITTYRVETRRVAKEIAKRK 123
Score = 35.5 bits (78), Expect = 0.044
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 256 LKPPSSNVIFKCRTCQGDHLTLYCPFK 336
LK S I +CR C+GDH T CP+K
Sbjct: 133 LKKLSGQKIVQCRICKGDHWTTKCPYK 159
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 692
A E DI +L +G + L++ ++ TG KG+A V ++ +A A+++LNG
Sbjct: 304 AQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQN 363
Query: 693 LNVEWS 710
++V+W+
Sbjct: 364 ISVDWA 369
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
+ DI + G V L ++++TG G+A+V++ DA KA++ +NG + L
Sbjct: 40 QEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLK 99
Query: 699 VEWSKP 716
V +++P
Sbjct: 100 VSFARP 105
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 573 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 716
+ + K +G GF +V + DA KAI LNG + +L V +S+P
Sbjct: 78 IVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSRP 125
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 552 GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 680
G V+K+ + + CKGF +V + +A AIQ+LNG Y
Sbjct: 299 GIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTLNGFMY 341
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 516 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
+E DI + + FG V L+KE TG KG+ ++ ++ + A AI S+N
Sbjct: 211 LEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 483 CHPYIKP*HFAV-EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 659
C Y+ +F + E I FGP++K+ L+ + KGFA+V + A A++
Sbjct: 102 CRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALE 161
Query: 660 SLNG 671
+NG
Sbjct: 162 QMNG 165
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 692
A E + ++ GPV L ++ TG KG+ + +K + A A+++LNG+ +
Sbjct: 36 ASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRA 95
Query: 693 LNVE 704
L V+
Sbjct: 96 LRVD 99
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 36.7 bits (81), Expect = 0.019
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 492 YIKP*HFAV-EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
Y+ HF + EA + + + FG V + L + T KG+ +V F+ A +A++ +N
Sbjct: 245 YVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMN 304
Query: 669 G 671
G
Sbjct: 305 G 305
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 35.5 bits (78), Expect = 0.044
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
E + +L+ FG + L K+ +TG KG+A+ + AIQ LNG
Sbjct: 686 EDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGLNG 736
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 35.1 bits (77), Expect = 0.058
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKST-GHCKGFAYVHFKFRADAAKA---IQSLNG 671
+A+ + GP+ + ++ K+K C+GF YV F DA KA I+S+ G
Sbjct: 33 DAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKAKDNIKSIKG 87
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEK--STGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 692
EA + + FG V + + ++K GF +V F DAAKA++ +N
Sbjct: 260 EAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEMNAKKILGRP 319
Query: 693 LNVEWSKP 716
+ V+W+ P
Sbjct: 320 VAVDWAVP 327
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 34.3 bits (75), Expect = 0.10
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
E D+ D+ +G + + L + G FA+V F+ DA A++ +GH +D +
Sbjct: 274 EKDLHDIFYKYGHIADVDLKNRRGAG--PPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIR 331
Query: 699 VEWSK 713
VE+ +
Sbjct: 332 VEFPR 336
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 716
FG + + + + +T +GF +V F+F D A AI ++N + V +KP
Sbjct: 28 FGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAKP 83
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 692
A E++I++L G V ++ L ++ G KG+ YV ++ + A+ A+ +L+
Sbjct: 182 AKESEIEELFSKHGVVKQVRLVTNRA-GKPKGYGYVEYEQESSASTAVLTLDKTEVKGRT 240
Query: 693 LNVEWSKPP 719
++V S PP
Sbjct: 241 ISVALSNPP 249
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 603 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 716
K +A+VHF R A KAI+ +G D L + +KP
Sbjct: 362 KDYAFVHFTERDHALKAIEETDGKEMDGLKIEASLAKP 399
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 582 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 716
++ TG +GF +V F + + KAI +G +D + V ++P
Sbjct: 38 DRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQP 82
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 582 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 716
++ TG +GF +V F + + KAI +G D + V +KP
Sbjct: 130 DRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKP 174
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 31.1 bits (67), Expect = 0.95
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +3
Query: 516 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
+E ++ L++ G + + L + +TG KGFA+ F + A +AI +LN
Sbjct: 165 LEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAITTLN 215
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 531 DDLVK---GFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 677
DDLV+ +G + +K T CKG+ +V F+ A KA+ +L G
Sbjct: 114 DDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAALVNKG 165
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 573 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 680
L + +TG KGFAYV + A A + LNG Y
Sbjct: 233 LKRNYNTGESKGFAYVTYNSVGSAIYAKEKLNGFEY 268
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 662
+ D+ + FG + + + ++ T KG+ YV F + AA A+++
Sbjct: 66 DEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALEN 113
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 483 CHPYIKP*HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 662
C+P P H + D+ FG + +++ KE++ F Y F + A AIQ
Sbjct: 344 CNPAPPPDHV-----LKDVFSRFGNLIDVWMMKERN------FGYAKFAAKQSADAAIQG 392
Query: 663 LNGH 674
L+GH
Sbjct: 393 LHGH 396
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/79 (29%), Positives = 33/79 (41%)
Frame = +3
Query: 480 NCHPYIKP*HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 659
N Y P F +AD+ + FG V + +K T K F +V + A AIQ
Sbjct: 278 NLFIYHLPQEFT-DADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQ 336
Query: 660 SLNGHGYDHLILNVEWSKP 716
+NG L V+ +P
Sbjct: 337 HMNGFQIGAKRLKVQLKRP 355
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +3
Query: 528 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEW 707
+ ++ +G V + L +++ +GFAYV + + KA++ ++G D + V+
Sbjct: 1173 VQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQS 1232
Query: 708 SKPPQ 722
PP+
Sbjct: 1233 VLPPR 1237
>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
Length = 297
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +2
Query: 77 EKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGE 247
E+ + +KS + K+ S GDS S P P+ + + ++V Q ++ ++ D E
Sbjct: 74 EEAIGAKSENEEKSESSSGDSESPPPKPHVSAKELIDEVVKQEMSKHKKKNNDGDSE 130
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
EAD+ L G + + + ++ TG +GF +V F + KAI +G D +
Sbjct: 22 EADVLFLRNGSKFLLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMK 81
Query: 699 VEWSKP 716
V ++P
Sbjct: 82 VNKAQP 87
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 534 DLVKGFGPVHKL-YLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
D FG + + + ++ TG+ KGFA+++F + AI+++NG
Sbjct: 118 DTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNG 164
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +3
Query: 528 IDD--LVKGFGPVHKLYLAK--EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
IDD L + F P + AK + G+ KGF +V F +A KA+ +NG
Sbjct: 223 IDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNG 274
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
+G + + L ++K TG KGF ++ ++ + A+ + NG
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
+G + + L ++K TG KGF ++ ++ + A+ + NG
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 573 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
+ K+ + KGF +V F R DAAKAI ++
Sbjct: 544 VVKDPAKNKSKGFGFVSFVRREDAAKAIAEMD 575
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = +2
Query: 26 KYDNDNKKVKIVRTYKIEKCVV-------SKSIAKRKTWSKFGDSASDK 151
K + +V+I R Y+IEKC + IAK KT K DSA+ K
Sbjct: 754 KVTTTSSQVEISRDYEIEKCEILVKLEKKEGVIAKMKTQQKSSDSAAAK 802
>SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
Length = 159
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 259 KPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 345
KPP S + KC C G H C F ++
Sbjct: 109 KPPQSATVSKCYRCDGKHDPRSCVFSQSK 137
>SB_11059| Best HMM Match : KID (HMM E-Value=0.046)
Length = 296
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = +2
Query: 26 KYDNDNKKVKIVRTYKIEKCVV-------SKSIAKRKTWSKFGDSASDK 151
K + +V+I R Y+IEKC + IAK KT K DSA+ K
Sbjct: 223 KLTTTSSQVEISRDYEIEKCEILVKLEQKEGVIAKMKTQQKSSDSAAAK 271
>SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09)
Length = 415
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 47 KVKIVRTYKIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNV 181
K I+R Y+ ++ + KR W +FG + K GP +N+
Sbjct: 179 KGPIIRQYRSSLALIGYAGRKRPHWMRFGQNPPSK-GPTTVNSNI 222
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 418 PPSSAGRIPGRDQPPVRRED 477
P RIPG DQP V RED
Sbjct: 630 PVKRVSRIPGNDQPRVSRED 649
>SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)
Length = 773
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 17 TEYKYDNDNKKVKIVRTYKIEKCVVSKSIAK--RKTWSKFGDSAS-DKPGPNPAT 172
T+Y D K+V I Y I KC K ++K ++T++ + AS +P P+PAT
Sbjct: 78 TDYINAKDAKRVDIKVIYTIRKC---KDLSKFCKETFNLYVYHASQSEPSPDPAT 129
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 259 KPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 345
KPP S + KC C G H C F ++
Sbjct: 1239 KPPQSATVSKCYRCDGKHDPRSCVFSQSK 1267
>SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8)
Length = 414
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 437 VYLVVISPLCVVKT*LPSVYQTLAFCG 517
+YLV+++ L V+ T LP +Y T CG
Sbjct: 324 MYLVLLTVLPVILTVLPGLYNTRVTCG 350
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 437 VYLVVISPLCVVKT*LPSVYQTLAFCG 517
+YLV+++ L V+ T LP +Y T CG
Sbjct: 375 MYLVLLTVLPVILTVLPGLYNTRVTCG 401
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 71 KIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVF 196
+I +CVV K + + D D+ P+ TNV DVF
Sbjct: 518 EISQCVVCKKLRGKPVEQHMADLPPDRTEVAPSFTNVGFDVF 559
>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +2
Query: 44 KKVKIVRTYKIEKCVVSKSIAK---RKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITS 214
K +++R Y+IEK +S+AK W KF + PNP T +D F
Sbjct: 559 KGYRVIRVYEIEKNPGLRSVAKMGLNCMWEKFVEQ------PNPQRTEYVDDPKAYFALL 612
Query: 215 KEESQRPDD 241
+S +D
Sbjct: 613 NNDSIEVND 621
>SB_55305| Best HMM Match : Pre-SET (HMM E-Value=4.6)
Length = 490
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 47 KVKIVRTYKIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNV 181
K I+R ++ ++ + ++R W FG +A K GP T N+
Sbjct: 351 KGPIIRGFRTSLALIGYAGSERPQWLSFGQNARYK-GPTTVTANI 394
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,060,542
Number of Sequences: 59808
Number of extensions: 405471
Number of successful extensions: 1134
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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