Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120058.Seq
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   29   2.5  
SB_11142| Best HMM Match : DUF473 (HMM E-Value=8)                      29   4.4  
SB_54208| Best HMM Match : fn3 (HMM E-Value=0)                         28   5.8  

>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 408 NLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEFHKRHATRYTQRLRNYKKHSRH 575
           N   M + E    H+  +NE     +CDN  YT  H R    YT R+R+ K ++ H
Sbjct: 51  NTLRMRENENYTLHM-RDNENYTLHMCDNENYT-LHMRDNENYTLRMRDNKNNTLH 104


>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3133

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 396  QEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEFHKRHAT 530
            Q++ +  ++   + +IF L YNN+ AV+ +C  L Y      H T
Sbjct: 1405 QDILSEVALYLPKYVIFELYYNNKRAVSGLCHWLSYQPGAVHHGT 1449


>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 396 QEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEFHKRHAT 530
           Q++ +  ++   + +IF L YNN+ AV+ +C  L Y      H T
Sbjct: 751 QDILSEVALYLPKYVIFELNYNNKRAVSGLCHWLSYQPGAVHHGT 795


>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 447 HLIYNNEEAVNVICDNLKYTEFHKRHATRYTQRLRNYKKHSRHHKPEHVL 596
           H ++      +  C  L  T +   HATR+T  +  Y  H+  H   H L
Sbjct: 129 HTLHVTGNTSHATCHTLHVTRYMS-HATRHTLHVTRYTSHATCHTLRHTL 177



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 435 QLIFHLIYNNEEAVNVICDNLKYTEFHKRHATRYTQRLRNYKKHSRHHKPEHV 593
           Q   H ++      +  C  L  T +   HATR+T  +  Y  H+  H+ +HV
Sbjct: 41  QATCHTLHVTGNTSHATCHTLHVTRYMS-HATRHTLHVTRYMSHATCHR-QHV 91


>SB_11142| Best HMM Match : DUF473 (HMM E-Value=8)
          Length = 151

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +3

Query: 294 DEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEA 473
           +EDD+         LVG     IK +++  +  ++  FN +   + ++L+ +++ N  ++
Sbjct: 46  NEDDSFLTQLHVEELVGKDTTQIKTVIVNPSGKFESRFNFSE--ETKKLLVNIVRNKWKS 103

Query: 474 V--NVICDNLKYTEFHKRHATRYTQRLRNYKKHSR 572
           V   V   +    E +KR           Y K SR
Sbjct: 104 VGNQVFAHSKIVPELYKRLRRSIEVEFCGYCKDSR 138


>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1292

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 491  QSKIYRVSQAARNALYTAFTQLQEAF*TPQTRTRFV 598
            +S IY +S  A + +YT  T+ Q    T  TRT+++
Sbjct: 1120 RSMIYTISTRAHSMIYTISTRTQSMINTIPTRTQYM 1155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,537,424
Number of Sequences: 59808
Number of extensions: 412312
Number of successful extensions: 1022
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)