Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120057.Seq
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.46 
SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)                       30   2.5  
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 552 FFGSFHRCLQFR*PLNFVAFD-TFHFYTLIYNICL*GVF 439
           FF  F RC Q+  P+ F  F   F +   ++++CL GVF
Sbjct: 22  FFAMFTRCFQYVYPVFFAMFTRCFRYVYPVFSLCLPGVF 60


>SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)
          Length = 518

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 41  YLLIRGDYESSSELKSLRDLNPWVQNTLLKLL 136
           Y L+RG  +SS E+KS+R  +PW    LL L+
Sbjct: 68  YYLVRGFLKSSEEMKSIRH-SPWSVVALLTLV 98


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 480  NETCQMQQSSTVTEIVNSDEKIQKTYELAEFDLKNLSS-LESYETL-KIKLALSKYMAML 653
            NE  + + ++  TE++  +EK++   E  E   +NL+  L   E L KI+  L+  MA L
Sbjct: 2398 NERLETELATKETELIQCEEKVRDLQEKLELSEQNLNQLLRKAEALPKIEEELAVRMAAL 2457

Query: 654  S 656
            +
Sbjct: 2458 N 2458


>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 537 EKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 644
           +K +K + L + +LK L   E Y+ LK K  L KY+
Sbjct: 89  QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124


>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1408

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +3

Query: 594 LESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFSTLAFIHNRSI 767
           L+S + + I   L+ Y   LST++    L+   RN+   + I   +FS ++ +H+ +I
Sbjct: 180 LDSIQDVPIAKMLASYQLALSTMKNICTLMHDIRNRVAPKNILD-LFSDISNVHSYNI 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,806,407
Number of Sequences: 59808
Number of extensions: 377584
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)