Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120056.Seq
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 150 1e-36
SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_2420| Best HMM Match : GSH_synthase (HMM E-Value=7.9) 31 1.3
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0) 29 3.9
SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044) 29 3.9
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 29 3.9
SB_22195| Best HMM Match : Vicilin_N (HMM E-Value=0.72) 29 5.1
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043) 28 8.9
>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 150 bits (363), Expect = 1e-36
Identities = 64/84 (76%), Positives = 76/84 (90%)
Frame = +2
Query: 2 GHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAVTALAHLRAAILYFIDPSEQCGHSIED 181
GH DYKYLRWQV+DTPG+LDHPLEERN IEMQA+TALAHLR+A+LY D SEQCGH++E
Sbjct: 123 GHMDYKYLRWQVVDTPGVLDHPLEERNTIEMQAITALAHLRSAVLYVTDISEQCGHTLEQ 182
Query: 182 QISLFESIKPLFTSKPLIVVLNKM 253
Q+ LF +IKPLF++KPLIVVLNK+
Sbjct: 183 QVELFNNIKPLFSNKPLIVVLNKI 206
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/67 (46%), Positives = 47/67 (70%)
Frame = +3
Query: 528 RDDKPRPPVLPPSVLAKKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDERY 707
RD+K RPP +P +VL KK+ + ++ RKL D+E ELG+DY LDL++ + ++E+
Sbjct: 283 RDNKARPPCIPQAVLEKKKAMDVEGSKTRKLAVDVERELGEDYYLDLRQQWDLKNKEEKG 342
Query: 708 DVIPEIW 728
DVIPEI+
Sbjct: 343 DVIPEIF 349
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/46 (52%), Positives = 34/46 (73%)
Frame = +1
Query: 370 VPVMRMSTVTEEGVQEVKIEACERLLGHRVTEKMRTKKVDGILNRL 507
V ++ MST +EEGV +V+ AC+ LL RV KM++KKV+ I+NRL
Sbjct: 230 VTILPMSTFSEEGVMDVRNTACDLLLAQRVEVKMKSKKVNDIVNRL 275
>SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 325 KGNLVNADSNSDLSVVPVMRMSTVTEEGVQEVKIEACERLLGHRVTEKMRTKKVDGILNR 504
+ +VN N ++ R++ EE V++ +I+ R+ HR ++ K I R
Sbjct: 460 EAEMVNVCPNQQVNTTESTRLTEAMEEWVRQHEIQRLIRIKNHRAQKEKEKTKSQNIALR 519
Query: 505 LPWRC 519
LP C
Sbjct: 520 LPSNC 524
>SB_2420| Best HMM Match : GSH_synthase (HMM E-Value=7.9)
Length = 343
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 313 ETCSKGNLVNAD--SNSDLSVVPVM---RMSTVTEEGVQEVKIEACERLLGHRVTEKMRT 477
+T S NLV+ N + SV+P++ R+ T +E V K+EA L G + M
Sbjct: 106 KTHSLLNLVDNSPIQNKEESVIPLLKKRRVDTTAQESVLPGKLEAGPTLPGKQKDGPMFL 165
Query: 478 KKVDGILNRLPWR 516
K +G + LPW+
Sbjct: 166 WKQEGKESLLPWK 178
>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
Length = 1498
Score = 29.1 bits (62), Expect = 3.9
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = -3
Query: 479 FVRIFSVTRCPSSLSQASILTSCTPSSVTVDIRITGTTDRSEFESA--LTRFP--LEHVS 312
F I RC SLS S LT + VDI T DR ++A +T P L+ +
Sbjct: 231 FSNITKSARCKHSLS--SDLTPFI-QILRVDITTIATDDRPVVDTARLVTFAPPELKQLL 287
Query: 311 VRSSSNCFLLRDSSSGL 261
V +SSN L DSS+GL
Sbjct: 288 VVTSSNRLLKMDSSTGL 304
>SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)
Length = 537
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 406 GVQEVKIEACERLLGHRVTEKMRTKKVDGILNRLPWRCR 522
G+ I C L+ H+VT + T+ ++GI++R+P+ R
Sbjct: 182 GLDFSDIFTCCVLMNHQVTLPLSTRLLEGIVSRMPFGLR 220
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 597 KENRKRKLERDIEVELGDDYVLDLKKNYTEIPE 695
K+ KR + +IE+++ D Y L+ NYTE PE
Sbjct: 317 KDGNKRWVCSNIELDMPDTYKLETNSNYTE-PE 348
>SB_22195| Best HMM Match : Vicilin_N (HMM E-Value=0.72)
Length = 263
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 579 KEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDE 701
+E+ + ++ L+R + +LG DY+ D++ Y +D+
Sbjct: 101 REQDQQISSKPETLDRGVSTDLGFDYIRDIELEYKNTLQDK 141
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 531 DDKPRPPVLPPSVLAKKEKQAE 596
D P+PP LPP++L +Q E
Sbjct: 492 DKPPQPPTLPPTILTTSTQQIE 513
>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
Length = 831
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 531 DDKPRPPV-LPPSVLAKKEKQAEKENRKRKLERDIEVELGDD 653
DD P V LPP++ +K +K +E N++ + D + + GDD
Sbjct: 667 DDNDAPFVMLPPTMTSKSDKTSE-SNKEEDSDDDDDDDYGDD 707
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,571,382
Number of Sequences: 59808
Number of extensions: 365850
Number of successful extensions: 1443
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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