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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120052.Seq
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)                      109   2e-24
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.047
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)                 36   0.047
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)                 34   0.14 
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       33   0.33 
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)                 33   0.33 
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)                    32   0.58 
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.58 
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)                  31   0.77 
SB_45343| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)                 30   2.4  
SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       29   3.1  
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)                 29   4.1  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           29   4.1  
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               29   5.5  
SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_13859| Best HMM Match : Exonuc_VII_S (HMM E-Value=5.7)              29   5.5  
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74)                   29   5.5  
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 28   7.2  
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)                  28   7.2  
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    28   7.2  
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)                 28   9.5  
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)                    28   9.5  
SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66)                28   9.5  
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 718

 Score =  109 bits (263), Expect = 2e-24
 Identities = 50/80 (62%), Positives = 67/80 (83%)
 Frame = +1

Query: 1   LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 180
           LNGKE + G+ L+ GRA+K+AER  E+K + E+ + ER+ R+QGVNLY+KNLDD IDDER
Sbjct: 169 LNGKE-IGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDER 227

Query: 181 LRKEFAPFGTITSAKVMLED 240
           LR+EF+P+GTI+SAKVM +D
Sbjct: 228 LREEFSPYGTISSAKVMKDD 247



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 37/43 (86%), Positives = 41/43 (95%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
           GFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQR+E+RKA L
Sbjct: 255 GFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRREERKAQL 297



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/43 (39%), Positives = 29/43 (67%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 385
           GFV F +PEEA +AV  +NG+ +G + L+   A+++ +R A +
Sbjct: 152 GFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEV 194



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = +1

Query: 16  LVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEF 195
           L+  K ++VGR   K ER +++  + ++            N+YVKN  D +DDE++++  
Sbjct: 80  LLNDKKVFVGRWMSKKERIEKMGTQPKKF----------TNVYVKNFGDDMDDEQMKEIC 129

Query: 196 APFGTITSAKVMLE-DGRIK 252
           A  G I S KVM + +G+ K
Sbjct: 130 AEAGKIVSLKVMTDPEGKSK 149



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 1   LNGKELVEGKPLYVGRAQKKAERQKEL 81
           +NG+ L+  KPLYV  AQ++ ER+ +L
Sbjct: 272 MNGRILIS-KPLYVALAQRREERKAQL 297


>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
           G NL++ +L     D  L + F PFGT+ SAKV ++
Sbjct: 228 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFID 263



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 382
           GFV + +   A  A+  MNG  +G K L V L + K+  + +
Sbjct: 306 GFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDANRPY 347



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 178 RLRKEFAPFGTITSAKVMLE 237
           RL + F PFGT+ SAKV ++
Sbjct: 277 RLMQTFQPFGTVISAKVFID 296


>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
          Length = 362

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
           G NL++ +L     D  L + F PFGT+ SAKV ++
Sbjct: 276 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFID 311



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 382
           GFV + +   A  A+  MNG  +G K L V L + K+  + +
Sbjct: 321 GFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDANRPY 362


>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
          Length = 159

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 379
           GFV F S EE  KA+ E +G+    +P+ V  AQ + +R A
Sbjct: 48  GFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQPRGERGA 88


>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 358
           GFV +++ E+A KA+ ++NG  +G K L VA ++
Sbjct: 91  GFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSR 124



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 127 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 231
           +G NLYV N+   + +   RK F  +G I + +++
Sbjct: 131 KGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLL 165


>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 67  RQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 231
           + K LK  F +  S   T  +  NLY+  L   + +E +   F PFG I ++KV+
Sbjct: 94  QNKTLKVSFARPSS---TEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVL 145



 Score = 32.7 bits (71), Expect = 0.33
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 260 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 358
           FV + +P++A KAV EMNG  +  K L V+ A+
Sbjct: 72  FVNYDNPDDANKAVREMNGARLQNKTLKVSFAR 104


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 130 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 240
           G NL++ NLD  +D++ L   F+ FG I     ++ D
Sbjct: 99  GANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRD 135



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +2

Query: 260 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
           F+ F+S + +  A+  MNG+ +  +P+ V+ A +KE +
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKESK 183


>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
          Length = 623

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 254 LGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 370
           +GFV F  PE A KA  E++G +   + L++  A+ K++
Sbjct: 284 IGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPAKAKKE 322



 Score = 32.3 bits (70), Expect = 0.44
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 127 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 228
           +GV L+VKNL     +E L+++FA  G + SA +
Sbjct: 532 EGVTLFVKNLSFESTEEALKQKFAAVGPVKSATI 565


>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
          Length = 922

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
 Frame = +3

Query: 510 SSNDSNKTYNSKVECTAPCKPSTQAASAYANMQP---TYRPAPRAPAQSTIRTSLGARPI 680
           +S  ++K+  S +    P  PS+Q   A    Q    T  P PR+P +S+       RP 
Sbjct: 733 ASKSNSKSSLSSIPIRVPRPPSSQKTQANTASQASVDTASPLPRSPKRSSPILPPINRPA 792

Query: 681 TGQQGVAAAAASIRPPLVSQSSRP 752
           +G++    +A+S RP  VS+ S P
Sbjct: 793 SGRKS-TTSASSARP--VSRCSLP 813


>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 349
           GFV F++PE+A  AV  +NG+ V  + L +A
Sbjct: 102 GFVTFANPEDAQTAVKSLNGKEVQGRTLKIA 132


>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
          Length = 252

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 370
           GFV F S EE  KA+ E +G+ +  +P+ V  A+ + D
Sbjct: 140 GFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGD 177


>SB_45343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 528 KTYNSKVECTAPCKPST 578
           K YNSKVEC   CKP+T
Sbjct: 286 KFYNSKVECLKDCKPAT 302


>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
           GFV F + E A KA+ EMNG  V    + V++A+R+
Sbjct: 146 GFVTFDTWEAADKAIDEMNGLKVQHVHIRVSMARRQ 181


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +3

Query: 558  APCKPSTQAASAY---ANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPP 728
            AP  P+   A+AY   A + PT  PA   PAQ+ +  +  A P T     +    +  P 
Sbjct: 1317 APANPTAAPATAYPAQAPVNPTAAPATAYPAQAPVNPT--AAPATAYPAQSPFNPTAAPA 1374

Query: 729  LVSQSSRPAN 758
                +  PAN
Sbjct: 1375 TAYPAQAPAN 1384


>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 373
           GFV F S +E  KA+ + +G  +  +P+ V  AQ + +R
Sbjct: 53  GFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGER 91


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 370
           GFV F   E+A KA+ EM+   +G K +    A RK +
Sbjct: 557 GFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 136 NLYVKNLDDTIDDERLRKEFAPFGTITS 219
           +++V +L + +D+  LRK F PFG I++
Sbjct: 459 HIFVGDLAENVDNALLRKTFEPFGEISA 486


>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
          Length = 260

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
           GFV F++  EA KA  ++NG IV  + + V+L   +
Sbjct: 127 GFVTFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQ 162


>SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 477 HRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPST 578
           +R L++HV  +  +  +K Y++KVE     KPST
Sbjct: 236 YRKLRNHVNRERKSCRSKYYDAKVEHLKESKPST 269


>SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 453 VVQVDFLYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPST 578
           + Q D   +R  ++ V  + +    K YNSKV C   CKP+T
Sbjct: 487 LAQADQDRYRLFRNCVNRERNVCRAKFYNSKVVCLKDCKPAT 528


>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 382
           GFV F   E A +A+ +MNG  +  +PL +     + D  A+
Sbjct: 286 GFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTERGDSSAY 327



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 103 KSERLTRYQG-VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 237
           ++ERL +  G   LYV +L   I +  ++  F PFGT+ S +++ +
Sbjct: 231 EAERLKQPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYD 276


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 501 TMDSSNDSNKTYNSKVECTAPCKPSTQAASAYANM 605
           T D   + ++T + K+EC  P  P  +AAS  ++M
Sbjct: 430 TADDDEECDETSDGKMECEPPLDPPMKAASIASSM 464


>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
          Length = 496

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 10  KELVEGKPLYVGR-AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR 186
           + L   K +Y    +Q+K  +     R F  L S+     +   +++  L+    +E L+
Sbjct: 8   RRLTSSKIIYPESCSQRKPFQCFSASRPFALLPSKMSESEKLRKIFIGGLNWNTTEEGLK 67

Query: 187 KEFAPFGTITSAKVMLEDGR 246
             F+ +GTI    +M  DGR
Sbjct: 68  DYFSQWGTIVDCVIMKRDGR 87


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +1

Query: 10  KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRK 189
           K+  E K + +  A+K+ + +KE K K E+ + ER  R      Y + +    + +R R+
Sbjct: 747 KDRKERKKIEMEEAKKREQEEKERKEKEEKERIEREEREAKEREYAERIAKQNEIDRKRR 806

Query: 190 E 192
           E
Sbjct: 807 E 807


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +3

Query: 558 APCKPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRP-PLV 734
           AP +    +A   A  Q    PAP A A + +  +    P       AAA A +R  P  
Sbjct: 76  APAQAFAPSAPLAAPAQVAAAPAPAAAAPAPVPAAAAPAPAPAAPSAAAAPAPVRSVPST 135

Query: 735 SQSS 746
           S SS
Sbjct: 136 SPSS 139


>SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 465 DFLYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPSTQ 581
           DF  H     HVT D+ ND++  ++S  E +    P TQ
Sbjct: 335 DFSSHTDSNDHVTSDTQNDAD--FSSNTESSDRLNPDTQ 371


>SB_13859| Best HMM Match : Exonuc_VII_S (HMM E-Value=5.7)
          Length = 198

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 64  ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 177
           E ++ELK K E+LK E+L   Q V  + +  DD  DD+
Sbjct: 35  EEKEELKSKCEKLKEEKLKMEQVVWWWDEYGDDDDDDD 72


>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 376
           GFV   S ++   A+ +MN   VG + + VALA  K + +
Sbjct: 52  GFVLLQSADQIAPAIEKMNQSSVGGRNITVALALDKTENR 91


>SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74)
          Length = 67

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 49  AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTID 171
           A++K    K  K K+ Q+K+   T++     YVKN+    D
Sbjct: 18  ARRKTSLIKNFKTKYRQIKNRLNTKFSRSIRYVKNIGKAFD 58


>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 257 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 370
           GFV F + + A +AV + +GRI+  K + V +   + D
Sbjct: 83  GFVQFETEKGADEAVAKEHGRIINGKKIDVRIVNSRAD 120


>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
          Length = 253

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 260 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 376
           +V F   E+A KAV ++N R    +P+Y  L+   + R+
Sbjct: 116 YVKFRYEEDAEKAVNDLNNRWYNGQPIYAELSPVTDFRR 154


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
 Frame = +3

Query: 561 PCKPST----QAASAYANMQPTYRPAPRAPAQSTIRTS-LGARPITGQQGVAAAAASIRP 725
           P +PS     Q  S Y    P   P PR PA+  +       RPI+G+     +     P
Sbjct: 338 PAEPSAFSDVQRPSVYEIAPP---PRPRLPAREPVAEGGQEGRPISGEGPRHGSLIKEEP 394

Query: 726 PLVSQSSRPAN 758
           P   Q +RP N
Sbjct: 395 PRPPQKTRPMN 405


>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
          Length = 606

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 698 CCCCCIYSSTFSISKQSPS 754
           CCCCC +   F   K  P+
Sbjct: 513 CCCCCFFCFNFCCGKCKPN 531


>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 390 LSTCREWLVCACSKWAKYSSLVVQVDFLYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCK 569
           L + +  L+C  +   +  S   Q D    + L++HV     +   K Y SKVE    C+
Sbjct: 197 LRSTKRVLLCRSTWKNERQSAFAQGDHAEFKRLRNHVNRLRKSCREKYYTSKVEHLRNCE 256

Query: 570 P 572
           P
Sbjct: 257 P 257


>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
          Length = 841

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 46  RAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 192
           R +++AE       K  QL+ ERL   + V  +  +  +T    RLR+E
Sbjct: 580 RDRERAESASSKSEKVAQLREERLQSRERVQAFKTDYQETTLRRRLREE 628


>SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66)
          Length = 1097

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 426 SKWAKYSSLVVQVDFLYHRSLQHHVTMDSSNDSNKTYNSKVECTAPCKPST 578
           S+W    S +   D   +R L++ V  +  +  +K Y++KVE     KPST
Sbjct: 588 SEWGTIPSALGNQD--QYRKLRNRVNRERKSCRSKYYDAKVEHLKESKPST 636


>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1748

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 52  QKKAERQKELKRKFEQLKSERLTRYQGVNLY-VKNLDDTIDDERLRKEFA 198
           Q  +E  KEL    +QL+  +  +YQG +LY  KN   T+ +   R   A
Sbjct: 552 QDLSETNKELASYIDQLERSQNLQYQGKSLYKAKNKQRTLKEFLSRANLA 601


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,694,185
Number of Sequences: 59808
Number of extensions: 475041
Number of successful extensions: 1571
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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