Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120048.Seq
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   6e-17
SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)            29   5.5  
SB_40509| Best HMM Match : Cyclase (HMM E-Value=8.89965e-42)           29   5.5  
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 39/78 (50%), Positives = 50/78 (64%)
 Frame = +3

Query: 276 PFEGLIITNTEPLSSLSSRSACPRCGKSRMYFCYVCFIPVPALEGKIPYCKLPIKVDIIK 455
           PF  L I + EPL   + R+ CP+C  SR Y+CY C+  V      +P   LPI VDI+K
Sbjct: 23  PFSDLGIASHEPLRG-AERAPCPKCQTSRKYYCYECYTTVGIERSLVPSVTLPITVDIVK 81

Query: 456 HKGEINGKSTAAHAAVLA 509
           H+GE+ GKSTA HAA+LA
Sbjct: 82  HRGELAGKSTATHAAILA 99


>SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 566 KVVLLFPGAEAKSVRDLFNQQQNQPSYSEIMLSQLP 673
           KVVLLF G + K  +    +Q+  P Y+E ML  +P
Sbjct: 633 KVVLLFDGQKVKKKKTSTRKQEKNPVYNESMLFDIP 668


>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
          Length = 821

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 300 NTEPLSSLSSRSACPRCGKSRMYFCYVCFIPVPALE--GKIPYCKLPIKVDIIKHKGEIN 473
           N +P SS S ++     GKS +     C I +PAL   G  P   LP   +I  ++G+++
Sbjct: 581 NGKPYSSSSYKTKFHASGKSVLSRIVCCVIRIPALPAGGTFPQPLLP--GEIYNYRGKMD 638

Query: 474 GKS 482
            KS
Sbjct: 639 KKS 641


>SB_40509| Best HMM Match : Cyclase (HMM E-Value=8.89965e-42)
          Length = 325

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 512 VGKNSSMGCSAFTINLSFVFDNIHFYW*FTVRY 414
           VG +S+    +  INLS+ FDN   YW  + R+
Sbjct: 13  VGLSSTAPAPSKWINLSYKFDNTSIYWPGSTRF 45


>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -1

Query: 687 TL*PTGSCDNIISEYEG*FCC*LNKSRTDFA----SAPGNNKTTFPSVG*SGISGYVYTV 520
           TL P+G   +   +++   C  +  S  +F     +   + + T PS   SGI  Y+Y  
Sbjct: 280 TLPPSGGAKDFFCDFDHGTCGFVQSSSDNFNWIRNTGSTSTQNTGPSSDTSGIGHYMYIE 339

Query: 519 TSRGQE 502
           TS+G++
Sbjct: 340 TSKGRQ 345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,718,692
Number of Sequences: 59808
Number of extensions: 436970
Number of successful extensions: 874
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)