Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120045.Seq
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9)            35   0.069
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                28   7.9  

>SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9)
          Length = 373

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 25/79 (31%), Positives = 36/79 (45%)
 Frame = -3

Query: 345 NCKFSIPYLSLKSSRLLNMPNSGDFPVKMPIIPCTNQRI*HRCPIHLLHVDFLKALYCR* 166
           N +   P L +K+  +         PV +P I C N R  H CPI L+ +  + A YC  
Sbjct: 181 NTRRYCPTLLMKTPGITAQHCLSKHPVLLPNIACQNTR--HYCPILLVKIPGITAQYCLS 238

Query: 165 IFQKSLDYI*CKYNSRCRC 109
            +   L  I C+ N+R  C
Sbjct: 239 KYPALLPNIACQ-NTRHYC 256



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = -3

Query: 345 NCKFSIPYLSLKSSRLLNMPNSGDFPVKMPIIPCTNQRI*HRCPIHLLHVDFLKALYCR* 166
           N +   P L +K+  +        +PV +P I C N R  + CPI L+    + A +C  
Sbjct: 18  NTRHYCPTLLVKTPGITAQYCLSKYPVLLPNIACQNTR--YYCPILLVKTPGITAQHCLS 75

Query: 165 IFQKSLDYI*CKYNSRCRC 109
                L  I C+ N+R  C
Sbjct: 76  KHPALLHDIDCQ-NTRHYC 93


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 132 KYNSRCRCFRPHIPWHGCPYQCKCTPC 52
           KY +RC CFR  +   GC Y C+C  C
Sbjct: 863 KYLTRCECFRNGV---GCGYLCRCANC 886


>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 355

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 712 QQEWTEYFQQWKQRLQDDCTTCQNRQ 789
           QQ+W +  +QW+Q+LQ      Q RQ
Sbjct: 302 QQQWQQQQRQWQQQLQQSQLEQQQRQ 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,118,260
Number of Sequences: 59808
Number of extensions: 477764
Number of successful extensions: 1472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)