Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060085.seq
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   28   8.0  

>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
 Frame = +3

Query: 330  PTCPTRCSNSSLDP---THRQLKNCATRCNCFC*TYIPYLTTTDPCRPASSI 476
            P CP RC  + L P    H     C + C+  C    P    T  C PA  +
Sbjct: 1413 PDCPARCCITVLQPLNEKHNTTAECPSECSETCKPECPVKCCTGEC-PAGCL 1463


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 293 TEMRLYKEFKILANMSNALLKQQFGPDTPTIEEL 394
           T+M  Y+E +I   +  A++KQQ G D   I E+
Sbjct: 783 TDMDTYQEQEITQELQRAMMKQQVGLDHDEILEI 816


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,891,326
Number of Sequences: 59808
Number of extensions: 490657
Number of successful extensions: 1120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)