Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060083.seq
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7585| Best HMM Match : HMG_box (HMM E-Value=8.9)                    73   2e-13
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)                    31   1.1  
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_41186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)                 29   3.5  
SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038)                 29   3.5  
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   4.6  
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   28   6.0  
SB_39048| Best HMM Match : RVT_1 (HMM E-Value=1.9e-23)                 28   6.0  
SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_3881| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3)             28   8.0  
SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8)            28   8.0  
SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_7585| Best HMM Match : HMG_box (HMM E-Value=8.9)
          Length = 125

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 30/51 (58%), Positives = 37/51 (72%)
 Frame = +2

Query: 527 VDYPEIAEGVIPRHRFMSAYXQKIEPPDRRWAVFXICSRAL*NYCFKVPSR 679
           VDYPEIAEGV+PRHRFMSAY Q+IEPP+++W      +       FK+PSR
Sbjct: 1   VDYPEIAEGVVPRHRFMSAYEQRIEPPNKQWQYLLFAAEPYETIAFKIPSR 51


>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
          Length = 844

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 282 YECKLCLTLHNNEGSYLAHTQGKKH 356
           Y CK+C  + N E ++  H  GKKH
Sbjct: 357 YVCKVCKIMCNKEHAFRMHLHGKKH 381



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 207 EITTACTRNNRFKQRSYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ 359
           +++ A   N    Q   F+K   G + C+LC T   N    + H + +KHQ
Sbjct: 567 QVSIAGFANGENTQGCEFVKAVSG-FNCRLCKTFIMNGADVMKHVKARKHQ 616


>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1091

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 142 PGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
           PG    G  +A W+ +NR ++E LR  A + + +   P
Sbjct: 838 PGRVEAGRRLAKWNRTNRAKKEALRVAAAQQLPVTPGP 875


>SB_41186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 276 GSYECKLCLTLHNNEGSYLAHTQGKKHQ 359
           G Y C +C  +  +  ++L H  GKKHQ
Sbjct: 80  GGYYCNVCDCVVKDSINFLDHINGKKHQ 107


>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
          Length = 1115

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 142 PGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
           PG    G  +A W+ +NR ++E LR  A + + +   P
Sbjct: 552 PGRVEAGRRLAKWNRTNRAKKEALRVAAAQQLPVTPGP 589


>SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038)
          Length = 771

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 142 PGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
           PG    G  +A W+ +NR ++E LR  A + + +   P
Sbjct: 404 PGRVEAGRRLAKWNRTNRAKKEALRVAAAQQLPVTPGP 441


>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 587

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 243 KQRSYFMKNHLGSYECKLCLTLHNNEGSYLAH 338
           KQ +   K HL ++ CK C  + NN    + H
Sbjct: 103 KQLAKHSKTHLKTFTCKKCHQIFNNRSKLIKH 134


>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 241 NLLFLVQAVVISPAGLCYFPTMTLHLLHQ 155
           N + L+Q V   P G  YFP + +HL H+
Sbjct: 355 NAITLIQDVKDLPEGDLYFPVLPVHLRHK 383


>SB_39048| Best HMM Match : RVT_1 (HMM E-Value=1.9e-23)
          Length = 1062

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 192 QRPAGEITTACTRNNRFKQRSYFMKNHLGSYECKLCLTLH-NNEG 323
           ++P G  T    RN +FK+++       G+ +C  C   H NNEG
Sbjct: 396 RKPQGSRTQG--RNRKFKEQNKGQGKKTGAKKCDRCARTHANNEG 438


>SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 130 FQNRPGGKTGGGGVASWSESN 192
           F++  GG  GGGG + WS  N
Sbjct: 203 FKSHKGGAGGGGGSSQWSPEN 223


>SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 142 PGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
           PG    G  +A W+  NR ++E LR  A + + +   P
Sbjct: 200 PGRVEAGRRLAKWNRINRAKKESLRVAAAQQLPVTPGP 237


>SB_3881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 142 PGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
           PG    G  +A W+  NR ++E LR  A + + + + P
Sbjct: 263 PGQVEAGRRLAKWNRINRAKKETLRVAAAQQLPVAQGP 300


>SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3)
          Length = 220

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 142 PGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
           PG    G  +A W+  NR ++E LR  A + + +   P
Sbjct: 60  PGRVEAGRRLAKWNRINRAKKEALRVAAAQQLPVTPGP 97


>SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8)
          Length = 599

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 142 PGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
           PG    G  +A W+  NR ++E LR  A + + +   P
Sbjct: 443 PGRVEAGRRLAKWNRINRAKKEALRVAAAQQLPVTPGP 480


>SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 660

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 142 PGGKTGGGGVASWSESNRDRRERLR 216
           PG    GG +A W+  NR ++E LR
Sbjct: 338 PGRVEAGGRLAKWNRINRAKKETLR 362


>SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 142 PGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
           PG    G  +A W+  NR ++E LR  A + + +   P
Sbjct: 302 PGRVEAGRRLAKWNRINRAKKEALRVAAAQQLPVTPGP 339


>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 142 PGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
           PG    G  +A W+  NR ++E LR  A + + +   P
Sbjct: 799 PGRVEAGRRLAKWNRINRAKKEALRVAAAQQLPVTPGP 836


>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1473

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 142  PGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
            PG    G  +A W+  NR ++E LR  A + + +   P
Sbjct: 1045 PGRVEAGRRLAKWNRINRAKKEALRVAAAQQLPVTPGP 1082


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,627,258
Number of Sequences: 59808
Number of extensions: 319931
Number of successful extensions: 700
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)