Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060072.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   7e-14
SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)                   69   3e-12
SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   3e-07
SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06)                   43   3e-04
SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77)            40   0.001
SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_50298| Best HMM Match : Pentaxin (HMM E-Value=6.4e-05)              30   2.0  
SB_7030| Best HMM Match : Kazal_2 (HMM E-Value=4.6e-08)                30   2.0  
SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_17070| Best HMM Match : MFS_1 (HMM E-Value=0.083)                   29   4.6  
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   28   6.1  
SB_20260| Best HMM Match : fn3 (HMM E-Value=0)                         28   6.1  
SB_39659| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-27)                 28   6.1  
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 30/64 (46%), Positives = 49/64 (76%)
 Frame = +1

Query: 256 AVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLG 435
           +V++S KPGC+IAGADI+M++  +   +V  ++K G ++++ +E S KP +AAI G+C+G
Sbjct: 83  SVLMSAKPGCWIAGADINMLKAGENAAQVTEIAKGGQQVYQFLEDSPKPVVAAIMGTCMG 142

Query: 436 GGLE 447
           GGLE
Sbjct: 143 GGLE 146


>SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)
          Length = 230

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 30/44 (68%), Positives = 36/44 (81%)
 Frame = +3

Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLG 641
           EVMLGLLPG GGTQRLP L  +P +LD+ LTGK ++A KAKK+G
Sbjct: 42  EVMLGLLPGAGGTQRLPRLVGLPDSLDMMLTGKNIRAQKAKKMG 85



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 35/94 (37%), Positives = 45/94 (47%)
 Frame = +1

Query: 391 SRKPYIAAIQGSCLGGGLETALACKYRIAVKDSKTGFGLQKSCWDFCPAVEGHRDYLLSP 570
           S KP +AAI G+C+GGGLE AL+C YRIAV D KT     +      P   G +      
Sbjct: 2   SPKPVVAAIMGTCMGGGLELALSCHYRIAVNDGKTVLSAPEVMLGLLPGAGGTQRLPRLV 61

Query: 571 PYXXXXXXXXXXXX*KLIKXRNWGIVDLLVSPLG 672
                          +  K +  G+VD+LV PLG
Sbjct: 62  GLPDSLDMMLTGKNIRAQKAKKMGLVDMLVQPLG 95


>SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 29/83 (34%), Positives = 45/83 (54%)
 Frame = +1

Query: 253 SAVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCL 432
           +  +++GK G F AG+D+  +     +  + S    G E    + ++ +P I AIQG  +
Sbjct: 74  NVAVLTGKGGNFCAGSDLQELAQKDAETYMKSFYPPG-EGDGPMAEANQPVIGAIQGYAV 132

Query: 433 GGGLETALACKYRIAVKDSKTGF 501
           GGGLE AL C  R+  +DS  GF
Sbjct: 133 GGGLELALLCDLRVCEEDSVFGF 155



 Score = 35.9 bits (79), Expect = 0.031
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +3

Query: 540 GGTQRLPALTSIPTTLDLALTGKTVKADKAKKLG 641
           GG  RLP L  +   LDL +TG+ VKA +A ++G
Sbjct: 167 GGAVRLPYLIGLSRALDLIMTGRAVKAQEAIEIG 200


>SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 28/80 (35%), Positives = 43/80 (53%)
 Frame = +1

Query: 259 VIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGG 438
           ++++G    F AGADI  ++   T ++ +S    GH  + R+ +  KP IAA+ G  LGG
Sbjct: 89  IVLTGCGRAFAAGADIKEMQPL-TYQKCLSGDFLGH--WTRVSKCTKPVIAAVNGFALGG 145

Query: 439 GLETALACKYRIAVKDSKTG 498
           G E A+ C    A   +K G
Sbjct: 146 GCELAMMCDIIYASDKAKFG 165



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 23/57 (40%), Positives = 32/57 (56%)
 Frame = +3

Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGNCRSVSFPSWDQV 680
           E+++G +PG GGTQRL         +++ LTG  + AD A K G    V FP+ D V
Sbjct: 168 EILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDPINADHALKAGLVSKV-FPADDLV 223


>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +1

Query: 256  AVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLG 435
            A+I+ G  G F++G D+S+++   T  E   +    H+ F R+++     +AAIQG  +G
Sbjct: 924  ALILHGDAGTFVSGGDLSVLKEIHTPGEGEQMCYFMHKTFARLQRLPLISLAAIQGLAIG 983

Query: 436  GGLE 447
            GG E
Sbjct: 984  GGAE 987



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 510  EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLG 641
            +  +GL PG GG  RL  L      +++ L  K++K +++   G
Sbjct: 1021 QARMGLTPGWGGGARLVQLVGRQKAMEILLQCKSMKLEESLMCG 1064


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 23/74 (31%), Positives = 39/74 (52%)
 Frame = +1

Query: 277  PGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLETAL 456
            P  F AG D+  +   + K ++V+  K   +++ R+  SR   +AAI+G  + GG   +L
Sbjct: 1475 PNIFCAGLDLKEVLALR-KSKLVTFRKTFQDMWSRLYGSRLVTMAAIKGHAIAGGCVLSL 1533

Query: 457  ACKYRIAVKDSKTG 498
            AC Y +   D + G
Sbjct: 1534 ACDYSVMASDFRIG 1547


>SB_31836| Best HMM Match : ECH (HMM E-Value=3.3e-06)
          Length = 149

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +1

Query: 367 EIFRRIEQSRKPYIAAIQGSCLGGGLETALACKYRIAVKDS 489
           E F  IE+  KP IAA+  +C+GGG++   AC  R+   D+
Sbjct: 30  ESFTAIEKCEKPVIAAVHSACVGGGVDMICACDIRLCTSDA 70


>SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77)
          Length = 393

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +1

Query: 397 KPYIAAIQGSCLGGGLETALACKYRIAVKDS 489
           KP I AIQG  +GGGLE AL C  R+  +DS
Sbjct: 358 KPVIGAIQGYAVGGGLELALLCDLRVCEEDS 388


>SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +1

Query: 259 VIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGG 438
           ++ S  P  F AG D+        ++ +    +R  +++ ++  SR   +AA+ G  + G
Sbjct: 36  IVTSSMPKVFSAGLDLVKELYKSDEKRLFVFWRRFQDVWMQLYGSRLATVAAVNGHAVAG 95

Query: 439 GLETALACKYRIAVKDSKTG 498
           G   A AC YR+   +   G
Sbjct: 96  GCLLAAACDYRLMAANFTIG 115


>SB_50298| Best HMM Match : Pentaxin (HMM E-Value=6.4e-05)
          Length = 330

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 534 GGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGNCRSVSFPSWDQVL 683
           GG GT R+    ++  T      G T+KA  + +L NC    F  W +VL
Sbjct: 95  GGNGTSRVFNNGALRMTNSPHAGGVTLKAGGSLRLLNCTVTRFNMWSEVL 144


>SB_7030| Best HMM Match : Kazal_2 (HMM E-Value=4.6e-08)
          Length = 286

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 333 GRSCQSV*KRT*NIQKNRTITETV---YCRNTRQLSRRWIRDCSCM*ISHCCERLQN 494
           G SC+ V   T NI +  T+  TV   +CR  R  +  W+   S      C   LQN
Sbjct: 220 GTSCKHVTLPTENITEIPTVLVTVKRNHCRLKRDAAMAWVEGVSTSGFDLCLRELQN 276


>SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 146 VVTLDSPNVKVNSLNTQVMEEVSNIVNEIETN 241
           V T+      VNS N Q+MEE+  I+ ++E+N
Sbjct: 60  VATIKLNRKPVNSFNMQLMEEICLILEDLESN 91


>SB_17070| Best HMM Match : MFS_1 (HMM E-Value=0.083)
          Length = 313

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 154 SDYVNSIDQFAFCMYLACWNGILSAMYTGYE 62
           SD VN++  +  CM L     ++S + TGY+
Sbjct: 163 SDCVNTLVLYQMCMVLTALTSVISILATGYQ 193


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 546 TQRLPALTSIPTTLDLALTGKTVKADKAKKLGNCRSVSFPSWDQV 680
           T +LP    IPTT   A+T K    ++  +  +     F +W  V
Sbjct: 324 TTKLPMTEQIPTTKQTAMTEKKPTTERKHRTRSTPDTPFSTWSPV 368


>SB_20260| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1428

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 625 LSAFTVLPVRARSKVVGMEVRAGNLCVPPPPGKSPNMTSVVQILFWSL 482
           +SAFT++    RS+ V + +R G   VPP      N ++   ++ W L
Sbjct: 302 ISAFTIVGEGPRSECVEVFLRGGPPTVPPSNVTGQNTSTSSILITWEL 349


>SB_39659| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-27)
          Length = 334

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 679 TWSQEGKLTDLQFPNFXALSAFTVLP 602
           TW+Q+G +T ++F     L+  T+LP
Sbjct: 12  TWAQKGPVTQIEFAIISWLNGITILP 37


>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 259 VIISGKPGCFIAGADISMIENCKTKE-EVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLG 435
           V++ G    +  G  +++IE+      E  +     ++I R +  S+K  I A+QG+   
Sbjct: 245 VVLKGGYNFYSNGIHLNVIEDATDPALEAWNNINAINDIVRNVFTSKKVTITAMQGNAGA 304

Query: 436 GGLETALA 459
           GG+  ALA
Sbjct: 305 GGVMMALA 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,679,806
Number of Sequences: 59808
Number of extensions: 495918
Number of successful extensions: 1318
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)