Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060065.seq
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               127   1e-29
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     33   0.17 
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   31   0.67 
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_25060| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   3.6  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.6  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   6.2  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   6.2  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)              28   6.2  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   6.2  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   8.3  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           28   8.3  
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              28   8.3  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  127 bits (306), Expect = 1e-29
 Identities = 54/58 (93%), Positives = 56/58 (96%)
 Frame = +3

Query: 255 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 428
           +K AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 52  NKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 30/60 (50%), Positives = 43/60 (71%)
 Frame = +1

Query: 511 GHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLXAWSDILKVYKSQRLRAGXGKMRNRR 690
           GH IEKI E+PLV++D ++ + KT  AV  L+ + A+ D+ K   S+++RAG GKMRNRR
Sbjct: 138 GHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRR 197



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/52 (55%), Positives = 38/52 (73%)
 Frame = +1

Query: 100 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 255
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAV 51


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 372 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 259
           Y +HP  T+ YH H      R H Q+P + H +  Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 372 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 265
           Y +HP  T+ YHH  H +   ++ Q+P + H +  Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 363 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQP 262
           HP  T+ YH H      R H Q+P + H +   P
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQHP 438


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 387 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 274
           HH  CY  H    Y Y+ H H  + R H  YP  +H++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 387 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 304
           HH     RH  R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 396 TYVHHDTCYRRHPDRTYEYHHHGHA 322
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_25060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 405 WGRTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPPCY 253
           +G ++  +D  +  + D +Y  + + HA F   H  Y     W+ D   CY
Sbjct: 309 YGDSHACYDASHACYDD-SYACYDNSHACFDESHACYGDSHAWYDDSHACY 358


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -2

Query: 399 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 295
           R + HH   +  H    + +HHH H      H  +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 276  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 392
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 294 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 422
           G GR + R P   GGG  R   G +G M  GG    P   W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 387 HHDTCYRRHPDRTYEYHHH 331
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 167  GRGLAAPCTVSLFSEYTDTKGRATDRLI 84
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 440

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 422 LAPSRQPPTAESGLGGSVAATGVPALVQAEDTL 520
           +A  R PP+   G  G+V+  GVP L  A++ L
Sbjct: 169 MAMHRMPPSTLMGATGTVSTVGVPGLGGAQNPL 201


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 393 YVHHDTCYRRHPDRTYEYHHHGH 325
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 387 HHDTCYRRHPDRTYEYHHH 331
           HH   + RH  R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 387 HHDTCYRRHPDRTYEYHHHGH 325
           HH   + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 375 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 280
           CY +  +  + YHHH H      H Q+    H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +3

Query: 291 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 422
           WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 24  WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,494,026
Number of Sequences: 59808
Number of extensions: 425366
Number of successful extensions: 1262
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)