Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060062.seq
         (339 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                73   8e-14
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            27   3.9  
SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)          26   6.8  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    26   6.8  
SB_48955| Best HMM Match : CheW (HMM E-Value=1.2e-17)                  26   9.0  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   26   9.0  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 72.5 bits (170), Expect = 8e-14
 Identities = 32/44 (72%), Positives = 36/44 (81%)
 Frame = +1

Query: 64  PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
           PIRPDLVN VH +++KN RQPY V+K AGHQT AESWGTGR  A
Sbjct: 28  PIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVA 71



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 9   GRAVXRIPRVRGGGTHR 59
           GRAV RIPRVRGGGTHR
Sbjct: 67  GRAVARIPRVRGGGTHR 83


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 312 CPXA*TSXGXAGSSN-GYLPXRSPLSXVDATVPTPXGLRGGE 190
           CP    + G  G  N      R+P++  + TV  P GL+ GE
Sbjct: 814 CPPGTNTWGRKGVVNKANCTGRNPINVSEKTVTLPFGLKAGE 855


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 70  RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTXAESWGTGR 186
           RP       +SM K  R+PY  + +E GH+    S  T R
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTER 195


>SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)
          Length = 405

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 147 WSPNQX*IMGYWTYVRP 197
           W+  +   MGYW YVRP
Sbjct: 280 WAQEEPKNMGYWGYVRP 296


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 76   DLVNDVHVSMSKNSRQPYCVSKEAGHQTXAESWGTGRMFA 195
            D+ NDV ++++  +  PY +     H T  E   TG+  A
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIA 2073


>SB_48955| Best HMM Match : CheW (HMM E-Value=1.2e-17)
          Length = 247

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 164 LNHGVLDVCSPPRSPXGVGTVASTXDSG 247
           +N G+LD+C  P +   VGT+ +    G
Sbjct: 3   VNDGLLDICIVPAAADVVGTLGTLLSGG 30


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 57  YEYHHHGHAEFGRQH 13
           + +HHH H E+ R+H
Sbjct: 337 HRHHHHHHHEYNRRH 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,479,553
Number of Sequences: 59808
Number of extensions: 170096
Number of successful extensions: 353
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)