Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021023
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)                  137   6e-33
SB_11413| Best HMM Match : Adaptin_N (HMM E-Value=0.00025)             48   5e-06
SB_30335| Best HMM Match : BESS (HMM E-Value=1.9)                      28   7.1  

>SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 596

 Score =  137 bits (332), Expect = 6e-33
 Identities = 65/82 (79%), Positives = 75/82 (91%)
 Frame = +1

Query: 259 MEMVSADTELVSTLSRKLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVFFV 438
           MEM++  T  V  + +KLAPPLVTLLS+EPEVQYVALRNINL+VQKRP+ILK+EMKVFFV
Sbjct: 246 MEMMTPSTGFVQNILKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPEILKNEMKVFFV 305

Query: 439 KYNDPIYVKLEKLDIMIRLASQ 504
           KYNDPIYVKLEKLDIMIRLA++
Sbjct: 306 KYNDPIYVKLEKLDIMIRLANE 327



 Score =  135 bits (326), Expect = 3e-32
 Identities = 61/84 (72%), Positives = 75/84 (89%)
 Frame = +2

Query: 2   AALSEINEASVSGRPLVEMNAPTINKLLTALNECTEWGQVFILDALSNYSPRDAREAHSI 181
           AALSEIN+AS +   ++EMN+ TINKLLTALNECTEWGQ+FILD+L+ Y+P+D REA SI
Sbjct: 100 AALSEINDASPTAAAMMEMNSQTINKLLTALNECTEWGQIFILDSLAQYTPKDEREAQSI 159

Query: 182 CERITPRLAHANAAVVLSAVKVLM 253
           CER+TPRL+HANAAVVLSA+KV +
Sbjct: 160 CERVTPRLSHANAAVVLSAIKVTL 183



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 35/39 (89%), Positives = 37/39 (94%)
 Frame = +3

Query: 507 HIAQVLGELKEYATEVDVDFVRKAVRAIGRCAIKVEPSA 623
           +IAQVL ELKEYATEVDVDFVRK+VRAIGRCAIKVE SA
Sbjct: 329 NIAQVLAELKEYATEVDVDFVRKSVRAIGRCAIKVEQSA 367


>SB_11413| Best HMM Match : Adaptin_N (HMM E-Value=0.00025)
          Length = 435

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 22/75 (29%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = +1

Query: 286 LVSTLSRKLAPPLVTLLSAEP-EVQYVALRNINLVVQKRPDILKHEMKVFFVKYNDPIYV 462
           L   +  ++  PL+TLLS+   E+ +  L +I L++ + P +   + K+FF ++NDP ++
Sbjct: 90  LEEDILERIKGPLLTLLSSTNYELIFTVLCHIELLIAREPQLFVPDYKMFFSRFNDPQFL 149

Query: 463 KLEKLDIMIRLASQA 507
           + +KL I+  ++S++
Sbjct: 150 RRKKLQILTTISSES 164



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +3

Query: 492 IGFPSHIAQVLGELKEYATEVDVDFVRKAVRAIGRCAIKVEPSA 623
           I   S++ +V+ EL     +VD+D  ++++ AIG+ A+ V PSA
Sbjct: 160 ISSESNVEEVVTELSASVHDVDIDLAKESIHAIGQIAL-VVPSA 202


>SB_30335| Best HMM Match : BESS (HMM E-Value=1.9)
          Length = 386

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 119 VFILDALSNYSPRDAREAHSICERITPRLAHANAAVVLSAVKVLMS 256
           + ++D L  Y P  + E HSI + +T      +A V L A + L++
Sbjct: 158 ITLIDRLCGYEPGLSDELHSILQELTHLNRQEHAKVALRARQALLA 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,218,106
Number of Sequences: 59808
Number of extensions: 319958
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)