Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021018
(815 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36) 71 1e-12
SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40) 51 1e-06
SB_28855| Best HMM Match : SCP2 (HMM E-Value=0.0011) 43 3e-04
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 40 0.002
SB_12155| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.16
SB_10508| Best HMM Match : SCP2 (HMM E-Value=9.1e-08) 31 0.84
SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_55319| Best HMM Match : Hexapep (HMM E-Value=0.16) 29 3.4
SB_48762| Best HMM Match : Hexapep (HMM E-Value=0.3) 29 4.5
SB_42806| Best HMM Match : MORN (HMM E-Value=0) 29 4.5
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18) 29 4.5
SB_41447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_21892| Best HMM Match : Hexapep (HMM E-Value=3.8e-05) 29 6.0
SB_38675| Best HMM Match : HEAT (HMM E-Value=0.0016) 28 7.9
>SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)
Length = 330
Score = 70.9 bits (166), Expect = 1e-12
Identities = 30/81 (37%), Positives = 46/81 (56%)
Frame = +2
Query: 284 GFKVFKYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEGYWVINAKEGKGKVSYNG 463
GFK +E+ ++ D ++KV+G+Y FK++ GP G EG WV++ K G G V +
Sbjct: 170 GFKSAAVFDEIEKQIKKDGAKFVKKVKGVYCFKIQGGPGGKEGVWVVDVKSGNGSVKFGA 229
Query: 464 SEKPDVTFTISDEDVPILYPG 526
++K D T T+ D D L G
Sbjct: 230 NDKADCTITMKDNDFIQLMAG 250
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = +1
Query: 151 REVPRARIALQHNLGLGGAVVITMYRKGF 237
R+VP A++ALQHNLGLGGAV++ +YR GF
Sbjct: 121 RQVPGAKLALQHNLGLGGAVIVALYRMGF 149
>SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40)
Length = 331
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = +1
Query: 151 REVPRARIALQHNLGLGGAVVITMYRKGF 237
R+VP A++ALQHNLGLGGAV++ +YR GF
Sbjct: 266 RQVPGAKLALQHNLGLGGAVIVALYRMGF 294
>SB_28855| Best HMM Match : SCP2 (HMM E-Value=0.0011)
Length = 66
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +1
Query: 514 LISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQAAGRI 633
+ G+LNP +AF GK+KI+G+M +AMKL L +Q ++
Sbjct: 27 MFKGQLNPTQAFMAGKLKIKGDMMVAMKLEKLMKQLKSKL 66
>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 42.3 bits (95), Expect = 5e-04
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +1
Query: 514 LISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQ 618
+ G+LNP +AF GK+KI+G+M +AMKL L +Q
Sbjct: 232 MFKGQLNPTQAFMAGKLKIKGDMMVAMKLEKLMKQ 266
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 514 LISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQAA 624
+ +GK NPQ+ F +GK+K+ GN+ L MKL L + A
Sbjct: 679 MATGKANPQQLFMKGKLKVAGNIMLTMKLNQLFKDYA 715
Score = 35.9 bits (79), Expect = 0.039
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 332 TDQDNLIEKVRGIYGFKVRNGPDGAEGYWVINAKEGKGKVSYNGSE--KPDVTFTISDED 505
+D +L++KV+GI+ + V+ G W ++ K G V + KPD T T DED
Sbjct: 617 SDHPDLVKKVKGIFLWHVKKGGKVVSS-WTVDLKTPGGAVFTGPPKGGKPDTTITCEDED 675
Query: 506 V 508
+
Sbjct: 676 L 676
>SB_12155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 33.9 bits (74), Expect = 0.16
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 151 REVPRARIALQHNLGLGGAVVI 216
R+V AR+A+QHN G+GGA V+
Sbjct: 236 RQVEGARVAMQHNYGIGGAAVL 257
>SB_10508| Best HMM Match : SCP2 (HMM E-Value=9.1e-08)
Length = 153
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +2
Query: 338 QDNLIEKVRGIYGFKVRNGPDGAEGYWVINAKEGKGKVSYNGS--EKPDVTFTIS-DEDV 508
++++ ++ G Y F + G +G G W+++ G + E PDVTF++S DE V
Sbjct: 39 EEDMTSRIGGTYLFDI-TGENG--GTWIMDLSTVPGSIRATDKLVESPDVTFSMSVDEMV 95
Query: 509 PILY 520
I Y
Sbjct: 96 NIFY 99
>SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 318 KRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKK 437
K P P R++ S+ S+ S SE QT RV S+ +KK
Sbjct: 291 KEPSSPARSSVESNSSSSSTSSSEKGQTEIRVHDSAEQKK 330
>SB_55319| Best HMM Match : Hexapep (HMM E-Value=0.16)
Length = 224
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 427 IDDPVTLGAVWTVSDLETVDPADFLDQVVLVGLHGLFKDLHVFEDL 290
+DD + V + D+E VD LD V +V L D+ V ED+
Sbjct: 168 LDDVDVVNGVTLLDDVEVVDGVTLLDDVDVVDGDTLLDDVDVVEDV 213
>SB_48762| Best HMM Match : Hexapep (HMM E-Value=0.3)
Length = 592
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 427 IDDPVTLGAVWTVSDLETVDPADFLDQVVLVGLHGLFKDLHVFEDL 290
+DD + V + D+ VD LD V +V L D+HV ED+
Sbjct: 397 LDDVDVVDGVTLLDDVVVVDGDPLLDDVDVVDGDTLMDDVHVVEDV 442
>SB_42806| Best HMM Match : MORN (HMM E-Value=0)
Length = 778
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +2
Query: 359 VRGI-YGFKVRNGPDGAE--GYWVINAKEGKGKVSYNGSEKPDVTFTISDE-DVPILYPG 526
V G+ +G+ V GA+ G W N K GKGK + + + TF D P YP
Sbjct: 269 VNGLRHGYGVFTYASGAKYVGEWASNMKHGKGKYIFKNGQVFEGTFEQDHMLDFPDFYPS 328
Query: 527 N*T 535
T
Sbjct: 329 GMT 331
>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
Length = 736
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 237 LQRDAENVAAVADNPEASRSSNT*RSLKRPCKPTRTT 347
LQRD + A+ +N + S ++ T S P KP +TT
Sbjct: 144 LQRDVASSASAPENNQPSENTETLTSPPPPSKPPKTT 180
>SB_41447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 666
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 322 LFKDLHVFEDLEASGLSATAATFSASRWRILYGT 221
+ KD FED+ AS SA AT S + ILYG+
Sbjct: 398 VLKDAADFEDVAASIQSAFFATLSGKQQPILYGS 431
>SB_21892| Best HMM Match : Hexapep (HMM E-Value=3.8e-05)
Length = 462
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 427 IDDPVTLGAVWTVSDLETVDPADFLDQVVLVGLHGLFKDLHVFEDL 290
+DD + V + D++ VD LD+V +V L D+ V ED+
Sbjct: 133 LDDVDVVDGVTLLDDVDVVDGVTLLDEVDVVDGDPLLDDVDVVEDV 178
>SB_38675| Best HMM Match : HEAT (HMM E-Value=0.0016)
Length = 606
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 389 NGPDGAEGYWVINAKEGKGKVSYNGSEKPDVTFTI 493
NG D +G N ++G G + +NG+ KP T T+
Sbjct: 333 NGNDNLQGNGNGN-QQGNGNLQWNGNGKPQATVTV 366
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,440,602
Number of Sequences: 59808
Number of extensions: 465789
Number of successful extensions: 1095
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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