Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021016
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1693| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_26379| Best HMM Match : HALZ (HMM E-Value=1.4)                      30   2.4  
SB_20735| Best HMM Match : HALZ (HMM E-Value=4.6)                      30   2.4  
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_36690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_22359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_29375| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_1693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 353 PSTSTPIEPVNQGSRIRNVPIKYIPVLENGSGT-PARKP 466
           P TSTP+ P+ + + I    I+  P+ E G     AR+P
Sbjct: 124 PETSTPVTPIQETTPIHQTSIRETPISETGGVVLRARRP 162


>SB_26379| Best HMM Match : HALZ (HMM E-Value=1.4)
          Length = 421

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 353 PSTSTPIEPVNQGSRIRNVPIKYIPVLENG 442
           P TSTP+ P+ + + I    I+  P+ E G
Sbjct: 124 PETSTPVTPIQETTPIHQTSIRETPISETG 153


>SB_20735| Best HMM Match : HALZ (HMM E-Value=4.6)
          Length = 259

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 353 PSTSTPIEPVNQGSRIRNVPIKYIPVLENG 442
           P TSTP+ P+ + + I    I+  P+ E G
Sbjct: 143 PETSTPVTPIQETTPIHQTSIRETPISETG 172


>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 159 TSFKRDRADDEYSSDEELPALKRVKQLKRTNFQIL*LQKIQFLGRKMEKIEKPFV 323
           T +K   ++    S+ +LPA+    QLKR + + L LQ+ Q   +  ++I + FV
Sbjct: 272 TQYKGGYSEQGLLSEHDLPAVCDAVQLKRRDVEYLTLQQFQTEQQFSKRIREFFV 326


>SB_36690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 376 TCESGEQD-PKCTN*IHTSIGEWIRDSSTETKDTHTS 483
           TC  G +D  +  N  HT+ G+  RD S  T  THT+
Sbjct: 173 TCGQGHRDMSRNNNKTHTAGGQGHRDMSRNTYKTHTA 209



 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 364 NSN*TCESGEQD----PKCTN*IHTSIGEWIRDSSTETKDTHTS 483
           N+N T  +G Q+     + TN  HT+ G+  RD S  T  THT+
Sbjct: 94  NTNKTHTAGGQENRDMSRNTNKTHTADGQGHRDMSRSTNKTHTA 137


>SB_22359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 308 RKTVRYVPIQLEAGHPSTSTPIE--PVNQGSRIRNVPIKYIPV 430
           R  V+Y P++     P   TP+E  PV   + + + P+KYIPV
Sbjct: 78  RAPVKYTPVE---SAPVKYTPVESAPVKH-TPVESAPVKYIPV 116


>SB_29375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 317 VRYVPIQLEAGHPSTSTPIE--PVNQGSRIRNVPIKYIPVLE-NGSGTPARK-PRIHTPV 484
           V+Y P++     P   TP+E  PV   + +++VP+KY PV       TP +  P  +TPV
Sbjct: 205 VKYTPVE---SAPVKYTPVESAPVKH-TPVQSVPVKYTPVQSAPAKYTPVQSAPVKYTPV 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,111,256
Number of Sequences: 59808
Number of extensions: 437376
Number of successful extensions: 1362
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)