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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0019
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 37   0.009
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.026
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                33   0.14 
SB_34081| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)                32   0.32 
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          31   0.56 
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_14279| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)          30   0.98 
SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28)              30   1.3  
SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   1.7  
SB_16879| Best HMM Match : Stig1 (HMM E-Value=1)                       29   1.7  
SB_47086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)                 29   2.3  
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)                     29   2.3  
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      29   2.3  
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)                  28   4.0  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_43401| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_11360| Best HMM Match : PDZ (HMM E-Value=0)                         28   4.0  
SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)                 28   4.0  
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               28   4.0  
SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)                  28   4.0  
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)            28   4.0  
SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)             28   5.3  
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               28   5.3  
SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)                     27   6.9  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   9.2  
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 27   9.2  
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)                  27   9.2  
SB_9757| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  
SB_233| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.2  
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      27   9.2  
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                 27   9.2  
SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)                   27   9.2  

>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 229 PSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 330
           P+   +EPP  GE D  PP   G  PP G+ G E
Sbjct: 495 PAAEGEEPPPEGEGDDLPPEEGGEVPPEGEEGAE 528


>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +1

Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
           PPP  +   S P Q+   YG     PP   GY PP GQ GY
Sbjct: 297 PPPGQQGYGSPPGQQ--GYGP----PPGQQGYGPPAGQQGY 331



 Score = 34.7 bits (76), Expect = 0.046
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +1

Query: 205 PPPNHEQIPSEPNQE---PPNYGEQDRFPPNHNGYRPPNGQNGY 327
           PPP  +     P Q+   PP   +    PP   GY PP GQ GY
Sbjct: 279 PPPGQQGYGPPPGQQGYGPPPGQQGYGSPPGQQGYGPPPGQQGY 322



 Score = 34.3 bits (75), Expect = 0.060
 Identities = 22/55 (40%), Positives = 24/55 (43%)
 Frame = +1

Query: 163 NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
           NFN+H    +    PP    Q P  P Q    YG     PP   GY PP GQ GY
Sbjct: 213 NFNLH----IVGYGPPG---QQPGSPGQHQ-GYGTLPGPPPGQQGYGPPPGQQGY 259



 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +1

Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
           PPP  +     P Q+   YG     PP   GY PP GQ GY
Sbjct: 243 PPPGQQGYGPPPGQQ--GYGA----PPGQQGYGPPLGQQGY 277


>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 515

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 142 GGLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 288
           G + Q   FNV G      +  P NH   P +P Q P  +G  D+F PN
Sbjct: 167 GHMFQPPGFNVQG----GNKPGPENHSGPPFKPGQRPYQHGGPDQFGPN 211


>SB_34081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -3

Query: 191 TPNCPCTLKL----KACDSPPRTAPCTCLCTS*APLRIPVISPPLHSLTT 54
           TP C   ++L      CDSP R    T  C S  P+R+   +PP HS+ T
Sbjct: 111 TPTCDSPMRLLHATPTCDSPMRLLHATPPCDS--PMRLLHATPPCHSMKT 158


>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
          Length = 1202

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 181 QFGVNQQRPPPNHEQIPSEPNQEPPNYG--EQDRFPPNHNGYRPPN 312
           Q+  NQQ P P H   P + +   P Y   +  + PP H+  + PN
Sbjct: 497 QYNQNQQVPHPQHPPPPYQRSASYPGYSPEQYQQVPPPHSQMQQPN 542


>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +1

Query: 196 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
           Q  PP + +  P  P Q  P   +Q   P +   Y PP  Q  Y
Sbjct: 300 QSYPPTSQQSYPPTPQQSYPLTSQQSYLPTSQQSY-PPTSQQSY 342



 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +1

Query: 196 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
           Q  PP + +  P  P Q  P    Q  FPP      P N Q G
Sbjct: 332 QSYPPTSQQSYPPSPQQSYPQTSIQQNFPPTQ---PPNNSQQG 371



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
 Frame = +1

Query: 121 QVQGAVLGG-----LSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 285
           Q QGA+ G       +  +      Q G  +  PP  + Q+P+      P +G    +P 
Sbjct: 637 QYQGAMAGNNQPPTSTMQYQETTRQQMGTTRAYPPHPYAQVPAPCGNVQPQHGHPGMYPQ 696

Query: 286 NHNGYRP 306
           +  G  P
Sbjct: 697 HPQGSYP 703


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +1

Query: 178 GQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
           G  G NQ  PPP H   P +P    P  G   + PP   GY PP
Sbjct: 168 GYPGYNQ--PPPGHYPAPGQPGGYYPPPGGYQQPPP--GGYAPP 207


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
           N +  P +       P   PP +G     PP++ G+ PPN
Sbjct: 260 NHEGDPYHGGPFNQAPPGFPPRWGPPPHMPPDYRGFPPPN 299


>SB_14279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 190 VNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRP 306
           V + +P   +  IP+E NQ   N  E D F P   G +P
Sbjct: 50  VKKFKPGYQYSSIPTEANQGHQNEEEDDMFDPRPKGLQP 88


>SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)
          Length = 836

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 169 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
           N+      N    PPN  Q + + P+  PPN+ +  R  P+   Y PPN
Sbjct: 140 NISQSVRANPHYSPPNISQSVRANPHYSPPNFRQSVRANPH---YSPPN 185



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 169 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
           N+      N    PPN  Q + + P+  PPN  +  R  P+   Y PPN
Sbjct: 155 NISQSVRANPHYSPPNFRQSVRANPHYSPPNIRQSVRANPH---YSPPN 200



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 169 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
           N+      N    PPN  Q + + P+  PPN  +  R  P+   Y PPN
Sbjct: 200 NISQSVRANPHYSPPNIRQSVRANPHYSPPNISQSVRANPH---YSPPN 245



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 169 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
           N+      N    PPN  Q + + P+  PPN  +  R  P+   Y PPN
Sbjct: 185 NIRQSVRANPHYSPPNISQSVRANPHYSPPNIRQSVRANPH---YSPPN 230



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 193 NQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
           N    PPN  Q + + P+  PPN  +  R  P+   Y PPN
Sbjct: 133 NPHYSPPNISQSVRANPHYSPPNISQSVRANPH---YSPPN 170



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 193 NQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
           N    PPN  Q + + P+  PPN  +  R  P+   Y PPN
Sbjct: 178 NPHYSPPNIRQSVRANPHYSPPNISQSVRANPH---YSPPN 215



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 169 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHN 294
           N+      N    PPN  Q + + P+  PPN+ +  R  P+++
Sbjct: 215 NIRQSVRANPHYSPPNISQSVRANPHYSPPNFRQSVRANPHYS 257


>SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28)
          Length = 246

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 196 QQRP--PPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQN 321
           Q +P  PP    + S P Q+PP      R P   + Y+PPN  N
Sbjct: 139 QHKPATPPQSHYVNSNPWQQPP---VDMRMPMGRSNYQPPNMMN 179


>SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = +1

Query: 208 PPNHEQIPSEPN---QEPP-NYGEQDRFPPNHNGYRPPNGQN 321
           PP   Q P +P    Q PP NY       P   G +PP GQN
Sbjct: 171 PPGVYQGPHQPPPYCQPPPGNYSGYGAMDPRQGGAQPPMGQN 212


>SB_16879| Best HMM Match : Stig1 (HMM E-Value=1)
          Length = 232

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = +1

Query: 208 PPNHEQIPSEPN---QEPP-NYGEQDRFPPNHNGYRPPNGQN 321
           PP   Q P +P    Q PP NY       P   G +PP GQN
Sbjct: 171 PPGVYQGPHQPPPYCQPPPGNYSGYGAMDPRQGGAQPPMGQN 212


>SB_47086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 330
           N  R PP++  +  + ++ PP+Y E     PNHN  R     N  E
Sbjct: 406 NLFRGPPSYHSVCLD-HELPPSYDEAVNLCPNHNPVRTDRTANASE 450


>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
          Length = 1178

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +1

Query: 208 PPNHEQIPSEPNQEPPNYGEQDRFP---PNH-NGYRP 306
           PP   Q+PSEP    P+ G     P    NH NGY P
Sbjct: 66  PPGRRQVPSEPWYHHPDSGYPSSSPTSKSNHYNGYLP 102


>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +1

Query: 208 PPNHEQIPSEPNQEPPNYGEQDRFP---PNH-NGYRP 306
           PP   Q+PSEP    P+ G     P    NH NGY P
Sbjct: 110 PPGRRQVPSEPWYHHPDSGYPSSSPTSKSNHYNGYLP 146


>SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)
          Length = 297

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 151 SQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEP-PNYGEQD 273
           S  F    +G FG ++Q P  N +   S P+QE  P + +QD
Sbjct: 131 SLCFTVTPNGYFGTSRQNPAYNADGCTSGPSQETGPVHNQQD 172


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 187 GVNQQRPPPNHEQIPSEPNQEPPNYG--EQDRFPP 285
           G + Q PPP  E +PS+  + PP YG   Q+  PP
Sbjct: 636 GQSMQPPPPKTEGVPSQ--EYPPGYGVEGQESQPP 668


>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
          Length = 809

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 181 QFGVNQQRPP-PNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
           Q+ VN+Q+ P P  +Q   + N     Y  ++ FP  H     P G  G
Sbjct: 571 QYQVNEQQGPMPQQQQPQGDMNCGSYQYNRRNSFPLYHRAMSQPAGAYG 619


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 214 NHEQIPSEPNQEPPNYGEQDRFPPNHNG 297
           ++E  P +P QEPP +     +P +H G
Sbjct: 449 SYESSPPDPTQEPPRHVASKSWPSDHLG 476


>SB_43401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 282 WESILLPIIWWFLIRFARYLFMVWWWSLLIHAK 184
           W S  LP+ W    R A+++F+  WWS  +  +
Sbjct: 14  WTSKDLPMAWTSFKRHAQFMFV--WWSFAVEVR 44


>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 625

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 196 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 285
           Q  PPP  E I + P+  P   GE +  PP
Sbjct: 122 QTPPPPTPEVIETAPSPSPGENGEVNHVPP 151


>SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)
          Length = 315

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 244 QEPPNYGEQDRF-PPNHNGYRPP 309
           +EPP Y + + + PP   GYRPP
Sbjct: 43  EEPPVYAKPNNYQPPPQPGYRPP 65


>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 506

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 202 RPPPN--HEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
           R PP+  H+ + SE ++E     E D  P   N Y P    NG
Sbjct: 321 RQPPSIPHDLVTSEQDRESKFLHEFDELPDIENAYTPLPSMNG 363


>SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)
          Length = 577

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -3

Query: 191 TPNCPCTLKL----KACDSPPRTAPCTCLCTS*APLRIPVISPPLHS 63
           TP C   ++L      CDS  R    T  C S  P+R+P ++PP  S
Sbjct: 85  TPPCDSPMRLLHVTPPCDSSMRLLHATPPCDS--PMRLPHVTPPCDS 129


>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
          Length = 496

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 202 RPPPNHEQIPSEPNQEPPNY----GEQDRFPPNHNGYRPP 309
           R PP+H + PS   + PP++        R+ P+H  Y PP
Sbjct: 382 RYPPSHSRYPSSHPRYPPSHLRYPPSSLRYLPSHLRYPPP 421


>SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)
          Length = 392

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 184 FGVNQQRPPPNH--EQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
           FG++  RPP +   + + + P   PP      R   N +G  PPN + G+
Sbjct: 340 FGMSPVRPPTHSMAQAMGAPPPPLPPMQPRAPRMDYNWSGQYPPNMRGGW 389


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 211 PNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR 303
           PN + I  EP+++P   G +    P+H G R
Sbjct: 709 PNKDVIMDEPHRDPKQLGSRKHRDPDHLGSR 739


>SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 285 GWESILLPIIWWFLIRFARYLFMVWWWSL 199
           GW +++  ++WW+ +     + +VWWW L
Sbjct: 97  GWLNVV--VVWWWQLN----VVVVWWWRL 119


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +1

Query: 187  GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 315
            G N   PPP      S P+Q PP  G     PP   G  PP G
Sbjct: 927  GGNAPLPPPPPGG--SAPSQPPPPGGNAPPPPPPPGGSAPPPG 967


>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
          Length = 662

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 178 GQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFP 282
           GQ  + QQ+ P NH+Q      Q+PPN  +Q  +P
Sbjct: 292 GQMQLGQQQVP-NHQQSQHPGQQQPPNQ-QQPLYP 324



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 178 GQFGVNQQRPPPNHEQIPS--EPNQEPPNYGEQDRFPPNHNG 297
           GQ   NQQ+PP   +  P   +PNQ+ P  G+Q    P + G
Sbjct: 251 GQQQSNQQQPPQQQQHGPGQMQPNQQHP--GQQVSRQPQNAG 290


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
           N   PPP +   P+ P   PPN      +PP  N   PP
Sbjct: 171 NAPYPPPPYPPPPNPPYPPPPN----PPYPPPPNAPNPP 205



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = +1

Query: 205 PPPNHEQIPSEPNQE-PPNYGEQDRFPPNHNGYRPPNGQN 321
           PPP +   P  PN   PP     +  PPN     PPN  N
Sbjct: 180 PPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPN 219


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
 Frame = +1

Query: 178 GQFGVNQQRPPPNHEQIPSEPNQE----PPNYGEQDRFPPNHNGYRPP 309
           G  GVN   PP N+   P  P       PP   +    PP  NG  PP
Sbjct: 340 GGGGVNPPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPP 387



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +1

Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQN 321
           PP N    P  P   PP+ G+  R P    G R  NGQN
Sbjct: 399 PPTNGPPPPPPPTNGPPSEGKCGRKPA---GARIINGQN 434


>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1321

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 315
           +Q +PPP ++  P   +Q  P  G Q   PP  +  +PP G
Sbjct: 878 SQPQPPPGNQVNPPMSSQPQPPPGNQVN-PPMSSQPQPPPG 917



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 193  NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 315
            +Q +PPP ++  P   +Q  P  G Q   PP  +  +PP G
Sbjct: 942  SQPQPPPGNQVNPPMSSQPQPPPGNQVN-PPMSSQPQPPPG 981



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 193  NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 315
            +Q +PPP ++  P   +Q  P  G Q   PP  +  +PP G
Sbjct: 958  SQPQPPPGNQVNPPMSSQPQPPPGNQVN-PPMSSQPQPPPG 997


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 250 PPNYGEQDRFPP-NHNGYR-PPNGQNG 324
           PP+ G  DR PP +H  +  PP+G +G
Sbjct: 287 PPDRGRHDRGPPHDHRDFHGPPDGPHG 313


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 169  NVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 285
            NVH +F +  +  PP  ++ P+ P    PN  ++   PP
Sbjct: 1285 NVHQEFPIPPELKPPLPQRFPT-PTDIKPNVHQEFTIPP 1322



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 169  NVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 285
            NVH +F +  +  PP  ++ P+ P    PN  ++   PP
Sbjct: 1313 NVHQEFTIPPELKPPLPQEFPT-PTDIKPNVHQEFPIPP 1350


>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
          Length = 687

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFP--PNHNGYRPPN 312
           +Q RPP    + P EP + P   G     P  P H   RPP+
Sbjct: 321 DQGRPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPH 362


>SB_9757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 199 QRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR 303
           Q PP       S P+Q PP+     + PP  N ++
Sbjct: 12  QSPPSQSPPSQSPPSQSPPSQSPPSQSPPIMNNFQ 46


>SB_233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 199 QRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR 303
           Q PP       S P+Q PP+     + PP  N ++
Sbjct: 100 QSPPSQSPPSQSPPSQSPPSQSPPSQSPPIMNNFQ 134


>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1301

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 184 FGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRF-PPNHNGYRPPNGQNG 324
           F   Q+  PP  +Q+ S    +  +YG+   F  P    Y   +G  G
Sbjct: 761 FSSAQKASPPEQKQLKSTETSDSDDYGDFSNFETPTKESYNKSDGCTG 808


>SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 206 HHQTMNRYRANLIKNHQIMGSKIDSH 283
           HHQT  R+ +++I++HQ     I  H
Sbjct: 58  HHQTFIRHSSDIIRHHQTSSDIIRHH 83


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFP--PNHNGYRPPN 312
           +Q RPP    + P EP + P   G     P  P H   RPP+
Sbjct: 87  DQGRPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPH 128


>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 352

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +1

Query: 187 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
           GV    P P    IP  P     N  +   +P N N   P NG  GY
Sbjct: 195 GVLPPPPAPPGALIPPPPAPPTFNNNQNMGYPSNGNMGYPSNGNMGY 241


>SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)
          Length = 490

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 164 LKACDSPPRTAPCTCLCTS*APLRIPV 84
           +K C++PP+     C C +  P + PV
Sbjct: 217 IKRCNTPPKKLTIKCACPTTQPTKSPV 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,258
Number of Sequences: 59808
Number of extensions: 282903
Number of successful extensions: 1073
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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