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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0015
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_6965| Best HMM Match : EB (HMM E-Value=1.3)                         30   2.0  
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7)                     29   3.4  
SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 29   3.4  
SB_23695| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_11707| Best HMM Match : rve (HMM E-Value=0.00025)                   29   3.4  
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)              29   3.4  
SB_59606| Best HMM Match : rve (HMM E-Value=0.00032)                   29   3.4  
SB_58483| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)             29   3.4  
SB_48400| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69)                   29   3.4  
SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)             29   3.4  
SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)                   29   3.4  
SB_14783| Best HMM Match : rve (HMM E-Value=0.00014)                   29   3.4  
SB_9972| Best HMM Match : rve (HMM E-Value=0.16)                       29   3.4  

>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 20   DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
            D   T  RDRY VV +++G+ N+ K+I
Sbjct: 1086 DRNKTRGRDRYLVVDTEEGFCNIRKFI 1112


>SB_6965| Best HMM Match : EB (HMM E-Value=1.3)
          Length = 514

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 399 RHGISVPLCFVWARWKEGHSRSCSCWCDQITTLTGLP 509
           RH +SV +C    RW  G  R C     Q+ T   LP
Sbjct: 180 RHNLSVAICQCSVRWLCGFKRVCRFVSRQVPTSDNLP 216


>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1505

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20   DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
            D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 1356 DRNKTRGRDRYLVVDTEGGFCNIRKFI 1382


>SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7)
          Length = 247

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 98  DRNKTRGRDRYLVVDTEGGFCNIRKFI 124


>SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 1236

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20   DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
            D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 1091 DRNKTRGRDRYLVVDTEGGFCNIRKFI 1117


>SB_23695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 224 DSNKTRGRDRYLVVDTEGGFCNIRKFI 250


>SB_11707| Best HMM Match : rve (HMM E-Value=0.00025)
          Length = 353

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 254 DRNKTRGRDRYLVVDTEGGFCNIRKFI 280


>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1586

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20   DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
            D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 1437 DRNKTRGRDRYLVVDTEGGFCNIRKFI 1463


>SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)
          Length = 405

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 256 DRNKTRGRDRYLVVDTEGGFCNIRKFI 282


>SB_59606| Best HMM Match : rve (HMM E-Value=0.00032)
          Length = 404

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 255 DRNKTRGRDRYLVVDTEGGFCNIRKFI 281


>SB_58483| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)
          Length = 134

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 98  DRNKTRGRDRYLVVDTEGGFCNIRKFI 124


>SB_48400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 13  DRNKTRGRDRYLVVDTEGGFCNIRKFI 39


>SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69)
          Length = 756

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 607 DRNKTRGRDRYLVVDTEGGFCNIRKFI 633


>SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)
          Length = 810

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 661 DRNKTRGRDRYLVVDTEGGFCNIRKFI 687


>SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)
          Length = 544

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 508 DRNKTRGRDRYLVVDTEGGFCNIRKFI 534


>SB_14783| Best HMM Match : rve (HMM E-Value=0.00014)
          Length = 496

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 397 DRNKTRGRDRYLVVDTEGGFCNIRKFI 423


>SB_9972| Best HMM Match : rve (HMM E-Value=0.16)
          Length = 514

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
           D   T  RDRY VV ++ G+ N+ K+I
Sbjct: 365 DRNKTRGRDRYLVVDTEGGFCNIRKFI 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,305,122
Number of Sequences: 59808
Number of extensions: 344421
Number of successful extensions: 867
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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