Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0014
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                28   4.7  
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         28   4.7  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_32581| Best HMM Match : DUF1017 (HMM E-Value=8.4)                   27   6.2  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)                27   8.2  
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 332 PRTQVRKIVSLMHMTGLLRSETRTPVPPIAS 240
           PR  V+KI+   H  GL+ + T T  P +AS
Sbjct: 820 PRFLVKKIIVFTHKKGLIMNPTGTTTPSLAS 850


>SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 356

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = -1

Query: 450 RPSSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCT------STSIGTEDPGT*NRF-SNAY 292
           RP+S +    T RP+S+    T  R F P    T      STS  T  P + + F + A 
Sbjct: 70  RPNSQSTFTTTARPNSQSTFTTTARPFQPTFTTTARPKSQSTSTTTARPNSLSTFTTTAR 129

Query: 291 DRASSFGNTNSSSAHCLTT 235
              S+F  T        TT
Sbjct: 130 PLQSTFTTTARPLQSTFTT 148


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 203  WPGLGA-KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSV 334
            W  LG+  N+ R+ R+W  L   F ++  R +     FY P  +V
Sbjct: 1159 WTNLGSTSNSWRLTRRWVTLMVDFDSDALRFWGKGYGFYEPSLAV 1203


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 359 YVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVP 252
           Y AHR +SAP   ++  +S+  ++  ++  + T  P
Sbjct: 209 YHAHRRRSAPSASIKSSISVKPLSSTVKPNSPTEAP 244


>SB_32581| Best HMM Match : DUF1017 (HMM E-Value=8.4)
          Length = 308

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
 Frame = -2

Query: 461 RQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQ---SAPRTQVRKIVSLM-- 297
           R+    R  ++Q  Q  LRQ +   Q     Y   V HRH+     PR    K  S +  
Sbjct: 62  REHIKAREEEWQRRQQHLRQEKEDRQRELSQYRHQVLHRHEHMGMEPRRPASKSPSTVEH 121

Query: 296 HMT-GLLRSETRTPV--PPIASPRGD 228
           H    LLR     P   PPI  P GD
Sbjct: 122 HPNHSLLRHPYHLPFHPPPIRQPFGD 147


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
 Frame = -2

Query: 461  RQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQ---SAPRTQVRKIVSLM-- 297
            R+    R  ++Q  Q  LRQ +   Q     Y   V HRH+     PR    K  S +  
Sbjct: 1147 REHIKAREEEWQRRQQHLRQEKEDRQRELSQYRHQVLHRHEHMGMEPRRPASKSPSTVEH 1206

Query: 296  HMT-GLLRSETRTPV--PPIASPRGD 228
            H    LLR     P   PPI  P GD
Sbjct: 1207 HPNHSLLRHPYHLPFHPPPIRQPFGD 1232


>SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)
          Length = 1166

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -2

Query: 437 LQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTP 258
           + ++ S D++      S ++A F L Y  HR + A       ++S+  M  +  ++  + 
Sbjct: 80  IAYKSSSDLVTAAGGSSVLAAAFGLLYCKHRQRHARTQSEEDLLSMELMYSMQAADGLSE 139

Query: 257 VPPIA 243
           +PP A
Sbjct: 140 IPPPA 144


>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 408 SSKRGIVTNIRDFLPDLCCTSTSIGT 331
           +++RGI  NIR F+ ++C T+ ++ T
Sbjct: 27  TNERGIWQNIRRFVVEICVTTMNLAT 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,403
Number of Sequences: 59808
Number of extensions: 324267
Number of successful extensions: 1031
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)