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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0009
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  94   1e-19
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         46   4e-05
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          34   0.096
SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                31   0.90 
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        30   2.1  
SB_43547| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)                        28   6.3  
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)                  28   8.4  

>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 38/68 (55%), Positives = 56/68 (82%)
 Frame = +1

Query: 208  PITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYL 387
            P TT T+V+G+KF+ G ++A DTLGSYGSLAR+R+  R+M+VN+  ++G  GDYADFQY+
Sbjct: 871  PTTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYADFQYI 930

Query: 388  KDIIQQKI 411
            K +++QK+
Sbjct: 931  KSVLEQKV 938


>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
 Frame = +1

Query: 226 TVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQ 405
           TV+ +  +   VIA DT  S G     RD P+V K+    +LGC G + D   L   I  
Sbjct: 89  TVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTKHISA 148

Query: 406 KI-IDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI-QDGEPFLGAVDK 579
           ++ + E     G  +   ++   L+ +LY +R    P +   ++AG+  +G+  + + D 
Sbjct: 149 RLQMYEH--DHGKAMSCTAIAQMLSTMLYYRR--FFPYYTYNILAGLDSEGKGCVFSFDP 204

Query: 580 LGTAYEDAVISNGLGAYMATPLL--------RDAVDKGPLDQETAIAV 699
           +G+   +   + G  + +  PLL        ++ V   PL ++ A+A+
Sbjct: 205 VGSYEREVYRAGGSASALLQPLLDNQIGFKNQEGVPHTPLTRDKAVAL 252


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 661 PLRPSVEESPCKLLARSRSQHLHRLFPIYQQLRERVHHPEYRQPHSCSR 515
           PL  ++ ++  K  AR  + H H   PIYQ  +  VHHP+  +   C R
Sbjct: 392 PLHKTLFDALLKDAARDDNPHEHAAMPIYQN-KTNVHHPDSPEHEHCLR 439


>SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 958

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 91  TPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDK 252
           TP W N     A  N P N++   P  HG+    A++  P     T + +  D+
Sbjct: 468 TPAWANADQQQAQGNNPANSNADQPQDHGIYIVNANAGHPQAQEHTPVWMNADQ 521



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 91  TPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASP 210
           TP W N     A  N P N++   P  HG+    A++  P
Sbjct: 423 TPAWVNADQQQAQGNNPANSNADQPQDHGIYIVNANADHP 462



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +1

Query: 79  TMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDK 252
           T    P W N     A  N P N+    P  HG+    A++  P     T   V  D+
Sbjct: 374 TQEHMPAWANADQQQAQGNNPANSKADQPQDHGIYIVNANADHPQAQEHTPAWVNADQ 431


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 541 IQDGEPFLGAVDKLGTAYEDAVI-SNGLGAYMATPLLRDAVDKGPLDQETAI 693
           + DG   +  +D     +EDA++ S   GA +  P LRD V + PL+    +
Sbjct: 139 LPDGRYVIVIIDYFTRYFEDALLRSTKTGAVIDLPFLRDLVTQKPLEMRNKL 190


>SB_43547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 104 KTDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAPSRPPQLSSELSLTRDVLSPVTH 277
           +T+R L   +  ++++ +   P  VYRI  + +R  S   QLS  + LT    S   H
Sbjct: 163 RTERLLTGRLQTIDLVREFGSPTNVYRIADVVRRPFSEVLQLSGVIQLTEWEFSEACH 220


>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
          Length = 1220

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 562 ERVHHPEYRQPHSCSRGDPSCSSCCRGHESTSSAENGA*AGDHLQHSAH 416
           +   HPE   PHS +  + S SS    H ST+  +N +    H+    H
Sbjct: 457 QSAEHPEDHSPHSAASVENSSSSQHLEHNSTTHDDNQS-VSSHISDHDH 504


>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
          Length = 297

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 471 VDSCPLQQEEQDGSPLEQLCGCRY 542
           V   PL ++ +DG+PL   CG RY
Sbjct: 228 VAKTPLWRDAEDGTPLCNACGIRY 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,589,626
Number of Sequences: 59808
Number of extensions: 488184
Number of successful extensions: 2129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2128
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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