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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0002
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   2e-14
SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)               68   7e-12
SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   4e-09
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   6e-07
SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.2  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               30   1.6  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)         27   8.6  
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 29/54 (53%), Positives = 43/54 (79%)
 Frame = +2

Query: 431 GGLGLGVFEACILSEELAYGCSGIMAAVYITEVGQTPIIIAGNKEQQKKYLGRL 592
           GG+GLGV + C+++EEL+Y CSGI  A+    + + P+I+AGN+EQ+KKYLGR+
Sbjct: 175 GGIGLGVLDGCVVTEELSYACSGIQTAIEANSLAEMPVILAGNEEQKKKYLGRM 228



 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 20/38 (52%), Positives = 31/38 (81%)
 Frame = +2

Query: 248 TGFCFELTDEQKALQELARKFTKDEIIPVAGQYDKTGE 361
           +G  F ++DE +ALQ++ARKF ++EI+P A ++DKTGE
Sbjct: 32  SGISFAMSDELRALQDMARKFAREEIMPKAAEHDKTGE 69


>SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 31/90 (34%), Positives = 49/90 (54%)
 Frame = +2

Query: 263 ELTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGLG 442
           +L +  + L++  R F  +E+ PVAG++DK   YP   VK   E+GL+   +PE  GG G
Sbjct: 40  KLPETHEMLRKTCRDFADNELTPVAGKFDKEHRYPQEKVKMLGELGLLGVEVPESLGGTG 99

Query: 443 LGVFEACILSEELAYGCSGIMAAVYITEVG 532
           L  F   I  EE++ GC+ +   + +   G
Sbjct: 100 LDAFAYAIAMEEISRGCASLGCIMSVNNYG 129


>SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
 Frame = +2

Query: 266 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPW--PVVKKAWEVGLMNGHIPEHCGGL 439
           LT EQ  L+E+A  F ++E+ P A Q DK   +P      KK  ++G     +P   GG+
Sbjct: 41  LTSEQIHLREVAYNFCQNELAPYADQIDKENNFPKLREFWKKLGDLGFHGITVPVDDGGI 100

Query: 440 GLGVFEACILSEELAYGCSGIMAAVY--ITEVGQTPIIIAGNKEQQKKYLGRL 592
           G G  E  I+ EE++   SG +A  Y   + +    I   GNKEQ++KYL +L
Sbjct: 101 GSGYMEHIIVLEEMS-RVSGSIALSYGAHSNLCINQIARNGNKEQKRKYLPKL 152


>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
 Frame = +2

Query: 263 ELTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGLG 442
           +L++E++ +++   +F K++I P+  + D+  +    ++K  +E GLM   I    GG  
Sbjct: 41  QLSEEEEMMKQSVARFAKEKIQPLVSEMDQNSQMDPGIIKGLFEQGLMGIEIGSEYGGTD 100

Query: 443 LGVFEACILSEELAY--GCSGIMAAVYITEVGQTPIIIAGNKEQQKKYLGRL 592
              F A ++ EELA       +M  V  T +    I+  G KEQ+++YL +L
Sbjct: 101 STFFAANLVIEELAKVDPSVSVMCDVQNTLINNL-IMTYGTKEQKQEYLPQL 151


>SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
 Frame = +2

Query: 269 TDEQKALQELARKFTKDEIIPVAGQYDKTGEYP-WPVVKKAWEVGLMNGHIPEHCGGLGL 445
           TD+   L+E   KF + EI P   +++K   +P   + KK  + G    + P   GG+GL
Sbjct: 259 TDDHVQLRENLNKFIEKEINPFVDEWEKAKMFPAHELFKKFGKAGYFGVNKPVKYGGMGL 318

Query: 446 GVFEACILSEEL-AYGCSGIMAAVYITEVGQTPIIIA-GNKEQQKKYL 583
               +  ++EEL +  C G+  A+ +     TP ++  G++E ++++L
Sbjct: 319 DYSFSVAMAEELGSIKCGGVPMAIGVQADMATPALVRFGSEELKQQFL 366


>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1046

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 266 LTDEQKALQELARKFTKDEIIPVAGQYDKTGEYPWPVVKKAWEVG 400
           LT+    L  +  K    E    A  Y+ TG   W VV +AW VG
Sbjct: 591 LTESALNLASICSKVHHGEANLAADYYEMTGLPLWEVVNRAWNVG 635


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -1

Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
           P S  Y+       P + SS    AS +  P  P  S   P   PTS ++  T   YSP 
Sbjct: 428 PASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 487

Query: 351 L-SY*PAT 331
             SY P +
Sbjct: 488 SPSYSPTS 495



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -1

Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
           PTS  Y+    P +   S S     S +  P  P  S   P   PTS ++  T   YSP 
Sbjct: 458 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 515

Query: 351 L-SY*PAT 331
             SY P +
Sbjct: 516 SPSYSPTS 523



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -1

Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
           PTS  Y+    P +   S S     S +  P  P  S   P   PTS ++  T   YSP 
Sbjct: 472 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 529

Query: 351 L-SY*PAT 331
             SY P +
Sbjct: 530 SPSYSPTS 537



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -1

Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
           PTS  Y+    P +   S S     S +  P  P  S   P   PTS ++  T   YSP 
Sbjct: 486 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 543

Query: 351 L-SY*PAT 331
             SY P +
Sbjct: 544 SPSYSPTS 551



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -1

Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
           PTS  Y+    P +   S S     S +  P  P  S   P   PTS ++  T   YSP 
Sbjct: 500 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 557

Query: 351 L-SY*PAT 331
             SY P +
Sbjct: 558 SPSYSPTS 565



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -1

Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
           PTS  Y+    P +   S S     S +  P  P  S   P   PTS ++  T   YSP 
Sbjct: 514 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 571

Query: 351 L-SY*PAT 331
             SY P +
Sbjct: 572 SPSYSPTS 579


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 516 YTAAMIPEHP*ASSSLKIQASNTPKP-RPPQCSGMCPFIRPTSQAF 382
           Y   +   H   S+  ++Q S T +   PPQC  + P I P+ + +
Sbjct: 238 YVTDVFIVHKPTSTKFRVQVSETEQDANPPQCGEVSPIISPSMRIY 283


>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 522 VMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTS 391
           +++T+A  P HP +SS  ++    + KPR P  S +  FI  TS
Sbjct: 847 IVHTSAN-PRHPSSSSLSRLIVYTSAKPRYPSSSSLSRFIVLTS 889


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 52  NLISP---NCTQRIKFLYY*FV*IVL*FKLGRSIQDEPVGADCS 174
           NL++P   NC Q  + L Y    I   FKL RSI   P GA CS
Sbjct: 249 NLVNPDSINCIQYQRPLPYSSATIA--FKLERSIPARPFGAPCS 290


>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
          Length = 1052

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = -1

Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSP 355
           P S  Y+ A  P +  AS S    AS +  P  P  +   P   PTS ++  T   YSP
Sbjct: 733 PASPSYSPAS-PSYTPASPSYT-PASPSYTPASPSYTPTIPSYSPTSPSYSPTSPSYSP 789


>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -1

Query: 528 TSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSP 355
           T+   +++M+P  P +S S   Q S+TP   PP   G       TS +   + H   P
Sbjct: 376 TTTATSSSMLPNTPSSSPSTGTQPSSTPIHEPP-TQGTTLVTMETSTSHLKSSHHSRP 432


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 462 QASNTPKPRPPQCSGMCPF--IRPTSQAFFTTGHGYS 358
           QAS  P+ +PP    + PF    P++QA FT+   +S
Sbjct: 761 QASAGPQSQPPSTFNLAPFGVSAPSTQAPFTSAGSFS 797


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,293,820
Number of Sequences: 59808
Number of extensions: 331889
Number of successful extensions: 886
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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