Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0001
         (367 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   0.50 
SB_27073| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.66 
SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)           28   2.0  
SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   3.5  
SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      26   8.1  

>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 142 SQSTNILKRTGSSSARRKLHNSNSWMSRQTSHR 240
           +Q  +   + G  + R +LHNS SW +R ++H+
Sbjct: 485 NQIVSSSNQNGYEANRARLHNSRSWTARHSNHK 517


>SB_27073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 179 VVPAESYTTAIPGCHVKLRIAPRGLAAEPPISVPGLLSRTTARYPNATAL 328
           + PA  + T      VK+R+         P++V  LL RT  R PN  A+
Sbjct: 63  LAPANDFWTTEADGAVKIRMGESDATKGEPMTVVDLLERTVKRSPNRIAM 112


>SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)
          Length = 274

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 115 NKQHASGEWSQSTNILKRTGSSSARRKLHNSNSWMSRQTSHRPPRLSSG-ASYISAWITK 291
           N  H S  W+Q  N    +   +     HNS+ W    T+H    L+ G  ++ S+  T+
Sbjct: 147 NTTHNSSLWTQG-NTTHNSSLWTQGNTTHNSSLWTQGNTTHNSSLLTQGNTTHNSSLWTQ 205

Query: 292 SNYRQIS*RYSTGH 333
            N    S  ++ G+
Sbjct: 206 GNTTHNSSLWTQGN 219



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +1

Query: 115 NKQHASGEWSQSTNILKRTGSSSARRKLHNSNSWMSRQTSHRPPRLSSG-ASYISAWITK 291
           N  H S  W+   N    +   +     HNS+ W    T+H     + G  ++ S+  T+
Sbjct: 110 NTTHNSSLWTHRGNTTHNSSLWTQGNTTHNSSLWTQGNTTHNSSLWTQGNTTHNSSLWTQ 169

Query: 292 SNYRQIS*RYSTGH 333
            N    S  ++ G+
Sbjct: 170 GNTTHNSSLWTQGN 183


>SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 115 NKQHASGEWSQSTNILKRTGSSSARRKLHNSNSWMSRQTSHRPPRLSSG-ASYISAWITK 291
           N  H S  W+Q  N    +   +     HNS+ W    T+H    L+ G  ++ S+  T+
Sbjct: 114 NTTHNSSLWTQG-NTTHNSSLWTQGNTTHNSSLWTQGNTTHNSSLLTQGNTTHNSSLWTQ 172

Query: 292 SNYRQIS*RYSTGH 333
            N    S  ++ G+
Sbjct: 173 GNTTHNSSLWTQGN 186


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +1

Query: 163 KRTGSSSARRKLHNSNSWMSRQTSHRP---PRLSSGASYISAWITKSNYRQIS 312
           +RT +  A+ K +  NS  +R+++  P   PRLSS   +  + + ++  RQ++
Sbjct: 341 RRTWNYGAKAKNNKLNSCRNRESNPEPRVTPRLSSWEMFAKSVVGRNTSRQVT 393


>SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 115 NKQHASGEWSQSTNILKRTGSSSARRKLHNSNSWMSRQ 228
           N + A   + Q+  + +RTG+ SA+  ++NS   M R+
Sbjct: 187 NYEEAMKYYQQALQVFERTGNESAKAGVYNSIGSMYRK 224


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 251 LAAEPPISVPGLLSRTTARYPNATALATKKAD 346
           LAA PP+S P    RT + +   ++++ +++D
Sbjct: 102 LAASPPVSTPRQQRRTPSSFTPRSSISRRRSD 133


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 245  GGRCEV*RDIQELLLC-NFLRALLDPV 168
            GGRCE+  D  E+ +C  + R   DPV
Sbjct: 1807 GGRCEIQEDGTEVCICPTYCRLNYDPV 1833


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,993,372
Number of Sequences: 59808
Number of extensions: 239015
Number of successful extensions: 1075
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)