Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B01
         (909 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)                       35   0.079
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)                      30   3.0  
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)                   29   3.9  
SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)               29   6.9  
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
          Length = 315

 Score = 35.1 bits (77), Expect = 0.079
 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 9/118 (7%)
 Frame = +3

Query: 537 LPPCW---KTXXFTSRSCXPRTNST*SSITRKVLVMTVSSIVIAPLTXXPHSYLEPSXYX 707
           LPPC+    T   T+ +       T S+ T+ V+  T      AP+T  P S ++P    
Sbjct: 112 LPPCYIPCPTATATTSTTATTPAKTTSATTKPVMTPTTP----APMTLPPISPIDPPRTQ 167

Query: 708 ATSCFX------SPPTVPXCXXPXXKIGRPPNXXPXGPXETSXPXLXXXXPPXLXXXP 863
               F        PP +P    P  +   PP   P  P  T  P +    PP     P
Sbjct: 168 PPPIFPIDPPRTQPPPIPPIDPPRTQ---PPPIPPIDPPRTQPPPIPPIDPPRTQPPP 222


>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
          Length = 260

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 339 W*AKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 205
           W +   +F++  SI  + A+L     F F    H+  AV+YS  T
Sbjct: 127 WQSSRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 218 YETAIAKCSEYLKEK--KGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFP 385
           Y + I K  E+ KEK  KG+  K    R  E GKR     A     +D  E +K +FP
Sbjct: 261 YPSLIDKLQEHEKEKELKGKRKKSKTSRSPEKGKREEEKDALLKQEEDEIERMKQFFP 318


>SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)
          Length = 338

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 161 VQVWR*KPAHTRRGRRQTKSVSSWRSGYL*KQVNKQLKILRK 36
           V+V R +P H R     + S++ WRS Y  +   + L+  R+
Sbjct: 163 VEVRRAEPGHHRSQASPSLSIAGWRSAYFVRSTRRSLRPARQ 204


>SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)
          Length = 435

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = +2

Query: 428 INKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENXXVYFKIMXT-EDXQYL 604
           +NK +H    + D  +   IA+G +  + ++ +     PV E    Y +   T ED    
Sbjct: 22  VNKYEHPIKSIEDLADQQGIAYGTAPGQLAEMLKTASLPVYEKLWRYIETHGTLEDNATY 81

Query: 605 KLDNTKGSSDDRIIYRDSPXD 667
            +D  +   D   I+  +  D
Sbjct: 82  AIDKVRSRDDYAFIWDSAVLD 102


>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 248 YLKEKKGEVIKEAVKRLIENGKRNTMDFAY 337
           + +E+ GE   EA KRLI+ GK+  M   Y
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIMFLLY 705


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,937,667
Number of Sequences: 59808
Number of extensions: 483742
Number of successful extensions: 1542
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)