Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A23
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22866| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_54427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_28773| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_36692| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_13156| Best HMM Match : adh_short (HMM E-Value=0.00022)             27   5.0  
SB_39523| Best HMM Match : Ribosomal_L34 (HMM E-Value=2.9)             27   8.7  

>SB_22866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 157 ESTSPGAVATLESIGNLGVKENKEIANEVSAFVEKELGIKK 279
           E   P     LE+   L  + NK++ANE   F+EK +  K+
Sbjct: 155 EKRKPNNALYLENRTELDFQRNKKLANEQDEFMEKHIQEKR 195


>SB_54427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 284 LSFLIPSSFSTNADTSFAISLFSLTPKFPIDSRVATAP 171
           +SFL   +  T A      SLF LTP FP++  +  +P
Sbjct: 762 MSFLDHRNTPTEAILVLVSSLFQLTPAFPVNVPIPYSP 799


>SB_28773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 298 FYDVLNYNVAKGGITIDLIEP*LFKTSSKD*KNT 399
           F D L   ++  G+ + L+EP  FKT + D K T
Sbjct: 20  FSDALRREMSPWGVGVVLVEPGAFKTQATDPKAT 53


>SB_36692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 205 LGVKENKEIANEVSAFVEKELGIKKDRFFLTFYDVLNYNVAKGG 336
           LG + N+    +   FV +E+GIK+D   ++F   L +++A GG
Sbjct: 245 LGNRRNQGSKQDFVLFVREEVGIKEDDDLMSFACEL-FDLATGG 287


>SB_13156| Best HMM Match : adh_short (HMM E-Value=0.00022)
          Length = 233

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 298 FYDVLNYNVAKGGITIDLIEP*LFKTSSKD*KNT 399
           F D L   ++  G+ + L+EP  FKT + D K T
Sbjct: 118 FSDALRREMSPWGVGVVLVEPGAFKTQATDPKAT 151


>SB_39523| Best HMM Match : Ribosomal_L34 (HMM E-Value=2.9)
          Length = 257

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 205 LGVKENKEIANEVSAFVEKELGIKKDRFFLTFYDVLNYNVAKGG 336
           LG + N+    +   FV +E+GIK+D   ++F   L +++A GG
Sbjct: 9   LGNRRNQGGKQDFVLFVREEVGIKEDDDLMSFACEL-FDLATGG 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,373,780
Number of Sequences: 59808
Number of extensions: 205765
Number of successful extensions: 527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)