Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A21
         (240 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24459| Best HMM Match : DNA_pol3_chi (HMM E-Value=1.2)              27   1.8  
SB_54685| Best HMM Match : RFX_DNA_binding (HMM E-Value=1.2e-08)       26   5.4  
SB_49497| Best HMM Match : WSC (HMM E-Value=0.015)                     25   7.2  
SB_18266| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_39874| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_31459| Best HMM Match : ASC (HMM E-Value=2.8e-09)                   25   9.5  

>SB_24459| Best HMM Match : DNA_pol3_chi (HMM E-Value=1.2)
          Length = 297

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 83  FRNRLQVFIIAMELTAEGKTPEYMALASIKFKLS 184
           F   L +   A E+  +G+TPE ++L S+K K++
Sbjct: 183 FLENLGLLYDAFEIHCKGRTPERVSLQSVKEKIA 216


>SB_54685| Best HMM Match : RFX_DNA_binding (HMM E-Value=1.2e-08)
          Length = 510

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 80  LFRNRLQVFIIAMELTAEGKTPEYMALASIKFKL--SLPHLKDNLQLKE 220
           L   +L++   AME+    +TP ++AL   + ++  +L  L +N +LKE
Sbjct: 92  LICEQLEILSCAMEVAKRKETPSHIALEKKQKQMTETLRWLGENYELKE 140


>SB_49497| Best HMM Match : WSC (HMM E-Value=0.015)
          Length = 300

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 54  SFVVDCAFTCLGTGYKFL*SQWNSQ 128
           S V DCA      GY++   Q+NSQ
Sbjct: 202 SMVEDCAQKVAAAGYRYFGFQYNSQ 226


>SB_18266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 17 YFATKLTEVIYLLFC 61
          +F TK  E++Y+LFC
Sbjct: 1  HFQTKRVELVYILFC 15


>SB_39874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 17 YFATKLTEVIYLLFC 61
          +F TK  E++Y+LFC
Sbjct: 1  HFQTKRVELVYILFC 15



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 17  YFATKLTEVIYLLFC 61
           +F TK  E++Y+LFC
Sbjct: 73  HFQTKRVELVYILFC 87


>SB_31459| Best HMM Match : ASC (HMM E-Value=2.8e-09)
          Length = 509

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 44  IYLLFCCRLCVYLF---RNRLQVFIIAMELTAE 133
           + LLFCC + +Y F    NRL+ + +     AE
Sbjct: 192 LLLLFCCAMFIYQFVISVNRLRAYKVVFSRGAE 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,823,543
Number of Sequences: 59808
Number of extensions: 84179
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 16,821,457
effective HSP length: 57
effective length of database: 13,412,401
effective search space used: 295072822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)