Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A13
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)             29   1.3  
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)               29   1.3  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)                28   2.9  
SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)                 28   2.9  
SB_11502| Best HMM Match : PA (HMM E-Value=9.3)                        28   2.9  
SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)                     27   5.1  
SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   6.7  
SB_5822| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  

>SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)
          Length = 316

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = +1

Query: 112 RNIIGFRKV-RGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKR-----LVI 273
           R IIG R + RGN   VR + A    + +  EH+ L     VR   E I K+     +++
Sbjct: 63  RVIIGARNLDRGNAA-VRDIQASSGSQQVFVEHLDLASLSSVRKFAEVINKKEERVDILM 121

Query: 274 NNKGLKWCQIMAT 312
           NN G+ W     T
Sbjct: 122 NNAGVAWIPFKRT 134


>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
          Length = 722

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 260 LAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNS 150
           LA+  +  RTRRA+KSL   L+  S + + S  LT S
Sbjct: 443 LAVKQSSPRTRRANKSLQAPLKPPSSSPRPSKALTGS 479


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 199  KEHIRLFEARRVRWTVEWIAKRLVINNKGLKWCQIMATRFKRIYEN-KRTGMDIHLQYLL 375
            ++ +R+ E+RRVR T+E    RLVI      W + M T   ++  +  RT    HL  ++
Sbjct: 2292 RDGLRVKESRRVRSTLENGIARLVITE---TWAEDMGTYKCQVRNDLGRTSTSAHLNIIV 2348

Query: 376  A 378
            A
Sbjct: 2349 A 2349


>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +1

Query: 100 LLLFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL-----FEARRVRWTVEWIAK- 261
           LLLF   + FR V GN+ F +       Y D++    R+     F  +   W  + ++K 
Sbjct: 388 LLLFMRNLTFRGVTGNIRFEKSGNPTNAYYDVMNFRKRVPGGKYFIEKVGFWKRDQVSKP 447

Query: 262 RLVINNKGLKW 294
           +L +N K ++W
Sbjct: 448 QLQVNGKLIQW 458


>SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)
          Length = 579

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 224 ASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPM 120
           A K LIC+L  S++  + S      T PL++L PM
Sbjct: 96  AFKVLICTLLFSAFRLERSPSTPPITAPLSYLPPM 130


>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
          Length = 383

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 263 LLAIHSTVQRTRRASKSLICSLRMSSYT---TKASTFLTNSTFP 141
           L A H+T+ RTR  S+S  CSLR + +    TK+    T+ T P
Sbjct: 232 LYARHNTLTRTRAPSRS--CSLRTAQHPHTGTKSPMLSTHGTTP 273


>SB_11502| Best HMM Match : PA (HMM E-Value=9.3)
          Length = 511

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 333 FVYPFESSSHDLTPFEAFVIDNKPFGYPF 247
           FVYPF++SS D T F  ++I  K  G PF
Sbjct: 154 FVYPFKTSSSD-TSFSTYII-MKGRGIPF 180


>SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)
          Length = 473

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 296 HHLRPLLL-ITSLLAIHSTVQRTRRASKSLICSLRMSSYTT 177
           H+  PL+  IT+  + + T+ RTR A+ ++I S    SY T
Sbjct: 224 HNATPLVQSITAPTSPNVTINRTREANSTMILSSTSVSYNT 264



 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 296 HHLRPLLL-ITSLLAIHSTVQRTRRASKSLICSLRMSSYTT 177
           H+  PL+  IT+  + + T+ RTR A  ++I S    SY T
Sbjct: 35  HNATPLVQSITAPTSPNVTINRTREAKSTMILSSTSVSYNT 75



 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 296 HHLRPLLL-ITSLLAIHSTVQRTRRASKSLICSLRMSSYTT 177
           H+  PL+  IT+  + + T+ RTR A  ++I S    SY T
Sbjct: 413 HNATPLVQSITAPTSPNVTINRTREAKSTMILSSTSVSYNT 453


>SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 929

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 178 VVYEDILKEHIRLFEARRVRWTVEWIAKRLVINNKGLKWCQ-IMATRFKRIYENKRT 345
           +VY DI +  +  +   R R    WI+ R+ +   G   C   +  + KRI +N+ T
Sbjct: 185 IVYHDIERPFVASYVRFRPRGWRSWISMRVEVYGCGSGLCNTAIGMQNKRIKDNRLT 241


>SB_5822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 187 EDILKEHIRLFEARRVRWTVEW-IAKRLVINNKGLKWCQIMAT 312
           E  L +HI   + RR+ +TV W I  R    +K  K C +  T
Sbjct: 325 ETELSKHIWQLKDRRINYTVSWKIIARAKAYSKESKRCNLCTT 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,965,512
Number of Sequences: 59808
Number of extensions: 205750
Number of successful extensions: 552
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)