Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A12
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                29   0.80 
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)       29   0.80 
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.9  
SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)                   28   2.4  
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             28   2.4  
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)                27   3.2  
SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.3  
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.5  
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             26   9.9  
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)                   26   9.9  
SB_35735| Best HMM Match : FF (HMM E-Value=2.29995e-41)                26   9.9  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.9  
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +3

Query: 219  RCSRTPRCWCSP--CGRRV--PDLRERAPGCTKDQ 311
            RCS T RC      C  RV  PD  +  PGC  DQ
Sbjct: 1133 RCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLDQ 1167


>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
          Length = 212

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +3

Query: 219 RCSRTPRCWCSP--CGRRV--PDLRERAPGCTKDQ 311
           RCS T RC      C  RV  PD  +  PGC  DQ
Sbjct: 160 RCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLDQ 194


>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3133

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 51  VPRYVKVSLWRSPGLRCAVSSTRWNR*Y 134
           V R V ++LWR P  R  +++T+WN  Y
Sbjct: 687 VNRGVLLNLWRPPRGRQVINNTQWNTLY 714


>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
          Length = 671

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 298 QPGARSRRSGTRRPHGEHQQR 236
           Q G+  RR   RRP+G+HQ +
Sbjct: 633 QDGSHERRKRKRRPYGKHQHK 653


>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 268 FRIYENVLQAVQKTNDGHPFKWLLEKD 348
           +R+   V+ A+QK+   +PFK LL+K+
Sbjct: 422 YRVGMTVMGAIQKSGTENPFKTLLDKE 448


>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
          Length = 617

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 222 CSRTPRCWCSPCGRRVPDLRERAPGCT 302
           CS     W  PCG  V  L E  PGCT
Sbjct: 546 CSVGRPSWMIPCGECVICLDEFKPGCT 572


>SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1179

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +3

Query: 300 TKDQ-RWSPLQVAAGEGH 350
           TKD  RW+PL  AAG GH
Sbjct: 876 TKDSSRWTPLHHAAGAGH 893


>SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = +3

Query: 207 VPSCRCSRT-PRCWCS 251
           +P  +CSRT P CWCS
Sbjct: 53  IPHGKCSRTTPWCWCS 68


>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -2

Query: 292 GARSRRSGTRRPH-GEHQQRGVREHRHDGT 206
           G R    GTRR H G  +  G     HDGT
Sbjct: 99  GTRRDHGGTRRDHGGTRRDHGGTRRDHDGT 128


>SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 243 WCSPCGRRVPDLRER 287
           W SPCG R  D RER
Sbjct: 492 WVSPCGTREEDSRER 506


>SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 293 RLYKRPTMVTPSSGC 337
           R+Y+ PTM TPS  C
Sbjct: 143 RVYRNPTMTTPSGTC 157


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
 Frame = +3

Query: 207  VPSCRCSRTPRCWCSPCGR-RVPDLRERA------PGCTKDQRWSPLQVAAGEGH 350
            +P  R    P C    C + R+  + +RA      P CT D R+SP+Q     G+
Sbjct: 863  IPGTRTKGRPNCEKPACMQERMYAMGDRAIPGRYVPKCTVDGRYSPMQCHYSSGY 917


>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1164

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = +3

Query: 210  PSCRCSR--TPRCWCSPC 257
            P C C +   P+C CSPC
Sbjct: 1146 PRCTCQQGSRPQCTCSPC 1163


>SB_35735| Best HMM Match : FF (HMM E-Value=2.29995e-41)
          Length = 251

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 331 T*RGDHRWSFVQPGARSRRSGTRRPH 254
           T R DHRWS V+P  +  R      H
Sbjct: 130 TLRKDHRWSMVEPLPKEEREKIFNDH 155


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 228  RTPRCWCSPCGRRVPDLRERAPG 296
            R+P    SP GRR+P+L E   G
Sbjct: 1090 RSPEKLLSPGGRRIPELPEELEG 1112


>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 108  TLHSVGPDSAIMTLLRNAALQSNDIAV 28
            T HS+  DS IM LLR  A + N + +
Sbjct: 1292 TAHSLDTDSFIMALLRFRARRGNPVRI 1318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,660,303
Number of Sequences: 59808
Number of extensions: 123224
Number of successful extensions: 543
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)